Variant report

Variant	rs16833878
Chromosome Location	chr1:152154434-152154435
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152027293..152028852-chr1:152153275..152155525,2	MCF-7	breast:
2	chr1:152023109..152026981-chr1:152153674..152157448,4	MCF-7	breast:
3	chr1:152015810..152018390-chr1:152153370..152155715,2	K562	blood:
4	chr1:152026285..152026873-chr1:152154304..152154844,2	MCF-7	breast:
5	chr1:152019877..152021951-chr1:152154042..152156834,2	MCF-7	breast:
6	chr1:152114200..152115180-chr1:152154330..152156221,19	MCF-7	breast:
7	chr1:152022027..152023625-chr1:152154015..152156299,2	MCF-7	breast:
8	chr1:152004874..152008437-chr1:152153479..152155850,3	MCF-7	breast:
9	chr1:152111927..152114607-chr1:152153105..152155250,3	MCF-7	breast:
10	chr1:152024776..152025649-chr1:152154319..152155043,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11204927	1.00[EUR][1000 genomes]
rs11204928	1.00[EUR][1000 genomes]
rs12076216	0.83[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12078021	0.83[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12079160	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12079949	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12082805	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12093184	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1390486	1.00[EUR][1000 genomes]
rs16833880	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1908639	1.00[EUR][1000 genomes]
rs1908640	1.00[EUR][1000 genomes]
rs58755711	1.00[EUR][1000 genomes]
rs72995325	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv872442	chr1:152054120-152187641	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv547854	chr1:152145661-152165878	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152151800-152158600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:152152200-152154800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:152152200-152161200	Weak transcription	Right Atrium	heart
4	chr1:152152400-152154600	Weak transcription	Osteobl	bone
5	chr1:152152400-152155000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:152152600-152154600	Enhancers	Brain Substantia Nigra	brain
7	chr1:152152600-152154800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:152152600-152154800	Enhancers	Brain Hippocampus Middle	brain
9	chr1:152152800-152154600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:152153600-152155400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:152153800-152155200	Enhancers	NHEK	skin
12	chr1:152153800-152159800	Enhancers	HMEC	breast
13	chr1:152154000-152160200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:152154200-152158000	Enhancers	NHDF-Ad	bronchial
15	chr1:152154200-152158200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:152154200-152158200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:152154400-152155400	Weak transcription	Esophagus	oesophagus
18	chr1:152154400-152161400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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