Variant report

Variant	rs16833966
Chromosome Location	chr1:152319877-152319878
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152161155..152163543-chr1:152319469..152321157,2	MCF-7	breast:
2	chr1:152319648..152320224-chr1:152423526..152424376,2	MCF-7	breast:
3	chr1:152319630..152320287-chr1:152413308..152413947,2	MCF-7	breast:
4	chr1:152163614..152164697-chr1:152319285..152320275,3	MCF-7	breast:
5	chr1:152024825..152025690-chr1:152319322..152320214,4	K562	blood:
6	chr1:152319612..152320487-chr1:152371083..152372082,2	MCF-7	breast:
7	chr1:152162006..152163447-chr1:152318869..152320295,9	MCF-7	breast:
8	chr1:152319690..152320209-chr1:152430662..152431472,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10494273	1.00[CHD][hapmap]
rs12071181	1.00[MEX][hapmap]
rs13375665	1.00[ASN][1000 genomes]
rs1390489	0.85[CHD][hapmap]
rs16833867	1.00[CHD][hapmap]
rs16834012	1.00[ASN][1000 genomes]
rs17359691	1.00[ASN][1000 genomes]
rs1858481	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs28726673	0.83[ASN][1000 genomes]
rs3126090	0.83[ASN][1000 genomes]
rs3126093	0.83[ASN][1000 genomes]
rs3134871	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs3134873	0.83[ASN][1000 genomes]
rs72477395	1.00[ASN][1000 genomes]
rs7354940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7536684	0.83[ASN][1000 genomes]
rs878649	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv998298	chr1:152288685-152319877	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152286600-152322200	Weak transcription	Ovary	ovary
2	chr1:152312400-152323800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:152317400-152331200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:152319600-152320000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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