Variant report

Variant	rs16834851
Chromosome Location	chr1:192774080-192774081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:192773819..192775227-chr1:192988234..192989224,6	MCF-7	breast:
2	chr1:192771126..192774213-chr1:192777407..192780045,3	K562	blood:
3	chr1:192773238..192775392-chr1:192775635..192777815,2	K562	blood:

Variant related genes	Relation type
ENSG00000116741	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10737617	0.83[ASN][1000 genomes]
rs10737618	0.92[ASN][1000 genomes]
rs10754031	0.92[ASN][1000 genomes]
rs10801151	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10801152	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10801153	0.95[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10801154	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10801156	0.94[EUR][1000 genomes]
rs10801157	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10801158	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10921264	0.81[ASN][1000 genomes]
rs10921265	0.92[ASN][1000 genomes]
rs10921266	0.81[AFR][1000 genomes]
rs10921267	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10921268	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11586572	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12565835	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1418718	0.95[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes]
rs1819741	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1933694	0.83[GIH][hapmap];0.83[ASN][1000 genomes]
rs2746071	0.95[CEU][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes]
rs2746072	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2746073	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3856223	0.90[ASN][1000 genomes]
rs4128057	0.83[ASN][1000 genomes]
rs6428136	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6657407	0.83[ASW][hapmap]
rs6669632	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6670129	0.83[ASN][1000 genomes]
rs6670801	0.84[ASN][1000 genomes]
rs6670806	0.84[ASN][1000 genomes]
rs6684156	0.97[EUR][1000 genomes]
rs6703040	0.88[ASW][hapmap];0.83[GIH][hapmap];0.91[LWK][hapmap];0.85[AFR][1000 genomes]
rs7525778	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7534336	0.81[AFR][1000 genomes]
rs7546861	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7549721	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv3371054	chr1:192772179-192774577	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192766200-192777200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:192770200-192775600	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:192770200-192776000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:192770400-192774600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:192771000-192775200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:192771000-192776000	Weak transcription	NHLF	lung
7	chr1:192771000-192776200	Weak transcription	NHDF-Ad	bronchial
8	chr1:192771000-192776400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:192771200-192775400	Weak transcription	Osteobl	bone
10	chr1:192771800-192774600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:192771800-192775800	Weak transcription	Fetal Lung	lung
12	chr1:192773800-192776400	Weak transcription	Fetal Intestine Small	intestine

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