Variant report

Variant rs16842162
Chromosome Location chr1:223958272-223958273
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:223937000-223959000 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:223937000-223960000 Weak transcription Thymus Thymus
3 chr1:223937200-223958400 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr1:223937200-223958400 Weak transcription Fetal Heart heart
5 chr1:223941000-223959400 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr1:223941200-223961600 Weak transcription H9 Cell Line embryonic stem cell
7 chr1:223942400-223958800 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr1:223949600-223958400 Weak transcription Small Intestine intestine
9 chr1:223954200-223958800 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr1:223954400-223958600 Weak transcription Ovary ovary
11 chr1:223954400-223961800 Weak transcription HepG2 liver
12 chr1:223954800-223964000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:223956400-223958400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr1:223956600-223958400 Strong transcription Gastric stomach
15 chr1:223956600-223958400 Strong transcription Skeletal Muscle Male skeletal muscle
16 chr1:223956600-223958600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:223956600-223958600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:223956600-223958600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
19 chr1:223956600-223958600 Strong transcription Colon Smooth Muscle Colon
20 chr1:223956600-223958600 Strong transcription Duodenum Mucosa Duodenum
21 chr1:223956600-223958600 Strong transcription Rectal Mucosa Donor 31 rectum
22 chr1:223956600-223958600 Strong transcription Skeletal Muscle Female skeletal muscle
23 chr1:223956600-223958600 Strong transcription Stomach Smooth Muscle stomach
24 chr1:223956600-223958600 Strong transcription HMEC breast
25 chr1:223956600-223958800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:223956600-223958800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr1:223956600-223958800 Weak transcription Primary B cells from cord blood blood
28 chr1:223956600-223958800 Strong transcription Fetal Muscle Trunk muscle
29 chr1:223956600-223958800 Strong transcription Fetal Muscle Leg muscle
30 chr1:223956600-223959000 Strong transcription iPS-20b Cell Line embryonic stem cell
31 chr1:223956600-223959000 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
32 chr1:223956600-223959000 Strong transcription Brain Anterior Caudate brain
33 chr1:223956600-223959000 Strong transcription Rectal Mucosa Donor 29 rectum
34 chr1:223956600-223959200 Strong transcription HUES64 Cell Line embryonic stem cell
35 chr1:223956600-223959200 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr1:223956600-223959200 Strong transcription Fetal Kidney kidney
37 chr1:223956600-223959200 Strong transcription Fetal Lung lung
38 chr1:223956600-223959400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:223956600-223959400 Strong transcription Rectal Smooth Muscle rectum
40 chr1:223956600-223960000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
41 chr1:223956600-223960400 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr1:223956600-223960800 Strong transcription Primary T helper naive cells from peripheral blood blood
43 chr1:223956600-223962800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
44 chr1:223956600-223963400 Strong transcription Primary T regulatory cells fromperipheralblood blood
45 chr1:223956600-223963600 Strong transcription Breast Myoepithelial Primary Cells Breast
46 chr1:223956600-223963600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
47 chr1:223956600-223963800 Strong transcription Primary T cells fromperipheralblood blood
48 chr1:223956600-223967000 Strong transcription Lung lung
49 chr1:223956600-223967200 Strong transcription Colonic Mucosa Colon
50 chr1:223956600-223968400 Strong transcription Fetal Brain Female brain

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