Variant report

Variant	rs16843177
Chromosome Location	chr2:210444045-210444046
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr2:210443842-210444638	H1-neurons	neurons:	n/a	n/a
2	SIN3AK20	chr2:210443869-210444513	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr2:210443765-210444668	H1-neurons	neurons:	n/a	n/a
4	CEBPB	chr2:210443974-210444113	H1-hESC	embryonic stem cell:	n/a	n/a
5	SIN3AK20	chr2:210444015-210444545	SK-N-SH	brain:	n/a	n/a
6	CTCF	chr2:210444000-210444150	SK-N-SH_RA	brain:	n/a	n/a
7	REST	chr2:210443889-210444486	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr2:210443951-210444627	PFSK-1	brain:	n/a	n/a
9	TAF1	chr2:210444038-210444586	PFSK-1	brain:	n/a	n/a
10	YY1	chr2:210443942-210444570	SK-N-SH	brain:	n/a	chr2:210444194-210444204
11	GATA2	chr2:210443926-210444563	SH-SY5Y	brain:	n/a	n/a
12	RAD21	chr2:210443880-210444546	SK-N-SH_RA	brain:	n/a	n/a
13	POLR2A	chr2:210443767-210444625	H1-neurons	neurons:	n/a	n/a
14	MAX	chr2:210443858-210444516	SK-N-SH	brain:	n/a	n/a
15	REST	chr2:210441990-210447759	H1-neurons	neurons:	n/a	n/a
16	POLR2A	chr2:210443854-210444200	SK-N-SH	brain:	n/a	n/a
17	POLR2A	chr2:210443855-210444656	PFSK-1	brain:	n/a	n/a
18	YY1	chr2:210443927-210444475	SK-N-SH_RA	brain:	n/a	chr2:210444194-210444204
19	TAF1	chr2:210443761-210444611	H1-neurons	neurons:	n/a	n/a
20	REST	chr2:210443712-210444692	H1-neurons	neurons:	n/a	n/a
21	EP300	chr2:210443886-210444198	SK-N-SH_RA	brain:	n/a	n/a
22	EP300	chr2:210443805-210444501	SK-N-SH_RA	brain:	n/a	n/a
23	MXI1	chr2:210442953-210446332	SK-N-SH	brain:	n/a	n/a
24	MAX	chr2:210443948-210444505	SK-N-SH	brain:	n/a	n/a
25	YY1	chr2:210443843-210444521	SK-N-SH_RA	brain:	n/a	chr2:210444194-210444204

Variant related genes	Relation type
MAP2	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10048829	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10174634	1.00[CEU][hapmap]
rs10179388	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs10196953	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs10197252	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10514642	0.81[TSI][hapmap]
rs10514643	0.81[TSI][hapmap]
rs11899684	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs12619473	1.00[CEU][hapmap]
rs13025539	0.81[TSI][hapmap]
rs13027724	0.81[TSI][hapmap]
rs13383482	0.92[EUR][1000 genomes]
rs13384979	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap]
rs13392785	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs13394033	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs13399574	1.00[CEU][hapmap]
rs13428159	0.86[AFR][1000 genomes]
rs1509472	1.00[CEU][hapmap]
rs16842909	0.81[TSI][hapmap]
rs16843062	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843513	1.00[CEU][hapmap]
rs16843555	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs17237076	0.92[EUR][1000 genomes]
rs17237719	0.81[TSI][hapmap]
rs17238784	1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.92[EUR][1000 genomes]
rs17239083	0.96[EUR][1000 genomes]
rs17308504	1.00[GIH][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs17309028	0.92[EUR][1000 genomes]
rs17309518	0.92[EUR][1000 genomes]
rs17316313	0.92[EUR][1000 genomes]
rs17316904	0.81[TSI][hapmap]
rs17317100	1.00[CEU][hapmap]
rs17317645	0.92[EUR][1000 genomes]
rs17317756	0.96[EUR][1000 genomes]
rs17745550	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.85[MKK][hapmap];0.82[YRI][hapmap]
rs288095	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4392185	0.84[AFR][1000 genomes]
rs55677311	0.85[AMR][1000 genomes]
rs58195909	0.88[EUR][1000 genomes]
rs59649490	0.88[EUR][1000 genomes]
rs59999353	0.88[EUR][1000 genomes]
rs60457662	0.88[EUR][1000 genomes]
rs6435535	1.00[CEU][hapmap]
rs6716675	1.00[CEU][hapmap]
rs6751280	1.00[CEU][hapmap]
rs73067004	0.88[EUR][1000 genomes]
rs73069087	0.88[EUR][1000 genomes]
rs73069088	0.88[EUR][1000 genomes]
rs73069096	0.88[EUR][1000 genomes]
rs7577387	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7603804	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs877782	1.00[CEU][hapmap]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210442000-210444400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:210442200-210444200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:210442600-210444200	Flanking Active TSS	Fetal Brain Male	brain
4	chr2:210443000-210444200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr2:210443000-210446000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:210443200-210446200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:210443400-210444400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:210443400-210446600	Active TSS	Brain Angular Gyrus	brain
9	chr2:210443600-210445000	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr2:210443600-210445800	Active TSS	Brain Germinal Matrix	brain
11	chr2:210443600-210446000	Active TSS	Fetal Brain Female	brain
12	chr2:210443600-210448200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:210443600-210461000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:210443800-210444400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:210443800-210444400	Active TSS	NH-A	brain
16	chr2:210443800-210444600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr2:210443800-210444600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:210443800-210444600	Active TSS	Brain Cingulate Gyrus	brain
19	chr2:210443800-210444600	Active TSS	Brain Substantia Nigra	brain
20	chr2:210443800-210444600	Active TSS	Fetal Kidney	kidney
21	chr2:210443800-210444600	Active TSS	NHDF-Ad	bronchial
22	chr2:210443800-210444600	Active TSS	NHLF	lung
23	chr2:210443800-210446200	Active TSS	Brain Anterior Caudate	brain
24	chr2:210443800-210446200	Active TSS	Brain Hippocampus Middle	brain
25	chr2:210443800-210447200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr2:210443800-210447800	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr2:210444000-210444200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:210444000-210444200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr2:210444000-210444200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr2:210444000-210444200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:210444000-210444200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:210444000-210444200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr2:210444000-210444200	Flanking Active TSS	Fetal Lung	lung
34	chr2:210444000-210444200	Flanking Active TSS	Fetal Muscle Leg	muscle
35	chr2:210444000-210444200	Enhancers	Gastric	stomach
36	chr2:210444000-210444200	Active TSS	Rectal Smooth Muscle	rectum
37	chr2:210444000-210444200	Enhancers	HUVEC	blood vessel
38	chr2:210444000-210444400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr2:210444000-210444400	Enhancers	H1 Cell Line	embryonic stem cell
40	chr2:210444000-210444400	Enhancers	H9 Cell Line	embryonic stem cell
41	chr2:210444000-210444400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr2:210444000-210444400	Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr2:210444000-210444400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr2:210444000-210444400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr2:210444000-210444400	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr2:210444000-210444400	Active TSS	Primary B cells from cord blood	blood
47	chr2:210444000-210444400	Enhancers	Primary B cells from peripheral blood	blood
48	chr2:210444000-210444400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr2:210444000-210444400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr2:210444000-210444400	Active TSS	Aorta	Aorta

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