Variant report

Variant	rs16843209
Chromosome Location	chr2:210450866-210450867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16843222	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16843257	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843292	1.00[AMR][1000 genomes]
rs59175910	1.00[AMR][1000 genomes]
rs59335890	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59417586	0.86[AFR][1000 genomes]
rs6745316	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6745900	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs73071056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73071057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73071074	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072859	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072863	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072867	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072876	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73074705	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73074707	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7576723	0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7576860	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16843209	DDX3Y	trans	lymphoblastoid	seeQTL
rs16843209	RPS4Y1	trans	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210443600-210461000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:210444800-210456800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:210446200-210456800	Weak transcription	Brain Anterior Caudate	brain
4	chr2:210446600-210461600	Weak transcription	Brain Angular Gyrus	brain
5	chr2:210447800-210460400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:210448600-210452000	Enhancers	Fetal Brain Male	brain
7	chr2:210449000-210451200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:210449200-210451000	Weak transcription	Brain Germinal Matrix	brain
9	chr2:210449600-210451800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210449800-210451200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:210450400-210452400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:210450600-210451000	Enhancers	Fetal Brain Female	brain
13	chr2:210450800-210451200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links