Variant report

Variant	rs16843292
Chromosome Location	chr2:210500070-210500071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16843209	1.00[AMR][1000 genomes]
rs16843222	1.00[AMR][1000 genomes]
rs16843257	1.00[AMR][1000 genomes]
rs59175910	1.00[AMR][1000 genomes]
rs59335890	1.00[AMR][1000 genomes]
rs6745316	1.00[AMR][1000 genomes]
rs6745900	1.00[AMR][1000 genomes]
rs73071056	1.00[AMR][1000 genomes]
rs73071057	1.00[AMR][1000 genomes]
rs73071074	1.00[AMR][1000 genomes]
rs73072859	1.00[AMR][1000 genomes]
rs73072863	1.00[AMR][1000 genomes]
rs73072867	1.00[AMR][1000 genomes]
rs73072876	1.00[AMR][1000 genomes]
rs73074705	1.00[AMR][1000 genomes]
rs73074707	1.00[AMR][1000 genomes]
rs7576723	1.00[AMR][1000 genomes]
rs7576860	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210481000-210500400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:210489800-210500400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:210490600-210500400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:210493600-210500200	Weak transcription	Fetal Brain Male	brain
5	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
6	chr2:210495000-210500400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:210495000-210500400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:210495200-210500600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:210495200-210500600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:210496200-210506800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:210496200-210507000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:210496400-210502200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr2:210498000-210500200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:210498800-210501200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:210499000-210500800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:210499400-210500400	Weak transcription	Brain Anterior Caudate	brain
17	chr2:210499600-210500800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:210499600-210501800	Enhancers	Brain Germinal Matrix	brain
19	chr2:210499800-210500200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:210499800-210501000	Enhancers	Fetal Brain Female	brain
21	chr2:210499800-210501400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:210500000-210500600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:210500000-210501200	Enhancers	Brain Angular Gyrus	brain

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