Variant report

Variant	rs16843574
Chromosome Location	chr2:210578053-210578054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10174385	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10208961	0.88[AFR][1000 genomes]
rs10497931	0.84[EUR][1000 genomes]
rs13000863	0.84[EUR][1000 genomes]
rs13404929	1.00[AMR][1000 genomes]
rs13424278	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34534060	1.00[EUR][1000 genomes]
rs6742070	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71420769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9288411	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210531400-210587800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210537000-210596800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:210541800-210596400	Weak transcription	Gastric	stomach
4	chr2:210544000-210596600	Weak transcription	Ovary	ovary
5	chr2:210544400-210598600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:210552800-210599400	Weak transcription	Pancreas	Pancrea
7	chr2:210553000-210583800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:210555600-210600200	Weak transcription	Left Ventricle	heart
9	chr2:210558000-210578800	Weak transcription	HUVEC	blood vessel
10	chr2:210558000-210598600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:210559600-210588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:210562200-210580600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:210562200-210581800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:210562400-210583200	Weak transcription	Brain Hippocampus Middle	brain
15	chr2:210562400-210593600	Weak transcription	Fetal Brain Male	brain
16	chr2:210567000-210585000	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:210571800-210598600	Weak transcription	Brain Substantia Nigra	brain
18	chr2:210573400-210585000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:210574800-210587600	Weak transcription	Aorta	Aorta
20	chr2:210575000-210587800	Weak transcription	Brain Anterior Caudate	brain
21	chr2:210575200-210586800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:210575800-210587600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:210577600-210580400	Weak transcription	Brain Germinal Matrix	brain
24	chr2:210577800-210581800	Strong transcription	Fetal Brain Female	brain

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