Variant report

Variant	rs16843887
Chromosome Location	chr2:210740305-210740306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10174744	1.00[EUR][1000 genomes]
rs10490026	0.84[YRI][hapmap]
rs10490028	0.92[YRI][hapmap]
rs11682914	0.84[YRI][hapmap]
rs12328328	0.89[YRI][hapmap]
rs12328346	0.87[YRI][hapmap]
rs12329111	0.93[YRI][hapmap]
rs12329303	0.92[YRI][hapmap]
rs13414802	0.92[YRI][hapmap]
rs1558474	0.84[YRI][hapmap]
rs16843890	1.00[EUR][1000 genomes]
rs16843893	0.91[YRI][hapmap]
rs2109970	0.93[YRI][hapmap]
rs2159747	0.85[YRI][hapmap]
rs6707821	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs73078916	1.00[EUR][1000 genomes]
rs7566741	0.84[YRI][hapmap]
rs7581628	0.93[YRI][hapmap]
rs7584039	0.88[YRI][hapmap]
rs7593426	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1004426	chr2:210709999-211001680	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:210733200-210791400	Weak transcription	Brain Angular Gyrus	brain
3	chr2:210735400-210769400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:210737800-210740800	Weak transcription	NH-A	brain
5	chr2:210737800-210742800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:210737800-210769400	Weak transcription	Brain Anterior Caudate	brain
7	chr2:210737800-210772400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:210738400-210740800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:210738600-210740800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:210739200-210740400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:210739400-210741200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:210739400-210741200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:210739400-210744200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:210739600-210742200	Enhancers	NHEK	skin
15	chr2:210739600-210744200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:210740200-210741400	Enhancers	HMEC	breast
17	chr2:210740200-210741600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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