Variant report

Variant	rs16843980
Chromosome Location	chr2:210833037-210833038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10170096	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10170116	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[EUR][1000 genomes]
rs10178327	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[EUR][1000 genomes]
rs10193560	0.92[EUR][1000 genomes]
rs10202111	1.00[EUR][1000 genomes]
rs1035090	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389681	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13394206	1.00[EUR][1000 genomes]
rs13406181	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13409845	1.00[CEU][hapmap];0.93[GIH][hapmap];0.92[EUR][1000 genomes]
rs13426807	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843943	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16843954	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs16843966	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16843970	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16843977	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2215670	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28587774	1.00[EUR][1000 genomes]
rs56947775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59268468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6435545	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6435547	1.00[EUR][1000 genomes]
rs6705019	1.00[CEU][hapmap]
rs6711347	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6724144	1.00[EUR][1000 genomes]
rs6729366	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6737494	1.00[EUR][1000 genomes]
rs6741654	1.00[EUR][1000 genomes]
rs73078966	1.00[EUR][1000 genomes]
rs73078987	1.00[EUR][1000 genomes]
rs73078988	1.00[EUR][1000 genomes]
rs73078990	1.00[EUR][1000 genomes]
rs73079001	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73080863	1.00[EUR][1000 genomes]
rs7557496	1.00[EUR][1000 genomes]
rs7558363	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7561328	1.00[EUR][1000 genomes]
rs7572197	1.00[EUR][1000 genomes]
rs7575283	1.00[EUR][1000 genomes]
rs7575600	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[EUR][1000 genomes]
rs7579974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7584962	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7593770	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1004426	chr2:210709999-211001680	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv998029	chr2:210751692-210838759	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210807000-210866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:210825600-210834200	Weak transcription	Brain Angular Gyrus	brain
3	chr2:210825800-210846600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:210825800-210858800	Weak transcription	Brain Anterior Caudate	brain
5	chr2:210826000-210847800	Weak transcription	Fetal Brain Female	brain
6	chr2:210826200-210834200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:210827400-210866600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:210827800-210833800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:210828000-210834200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:210828200-210835200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:210832400-210848600	Weak transcription	Brain Germinal Matrix	brain

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