Variant report

Variant	rs16844054
Chromosome Location	chr1:225311160-225311161
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1067206	0.81[EUR][1000 genomes]
rs1067207	0.85[EUR][1000 genomes]
rs10799296	0.89[EUR][1000 genomes]
rs10915791	0.89[EUR][1000 genomes]
rs10915797	0.89[EUR][1000 genomes]
rs10915798	0.89[EUR][1000 genomes]
rs10915802	0.89[EUR][1000 genomes]
rs10915803	0.89[EUR][1000 genomes]
rs10915806	0.86[EUR][1000 genomes]
rs11577306	0.86[EUR][1000 genomes]
rs11578729	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11580638	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11582482	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11583802	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11584486	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11585032	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11585124	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11586783	0.86[EUR][1000 genomes]
rs11587822	0.95[CHB][hapmap]
rs12064555	0.89[EUR][1000 genomes]
rs12068189	0.89[EUR][1000 genomes]
rs12068193	0.89[EUR][1000 genomes]
rs12077485	0.89[EUR][1000 genomes]
rs12077966	0.89[EUR][1000 genomes]
rs12090119	0.89[EUR][1000 genomes]
rs12097990	0.89[EUR][1000 genomes]
rs12402229	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12403292	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12403752	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12403778	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12406388	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12408302	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12408521	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs12410126	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12410491	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12411172	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12411174	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12728007	0.86[EUR][1000 genomes]
rs12729289	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12733373	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12733733	0.89[EUR][1000 genomes]
rs12736406	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12740067	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12740354	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12754116	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12754230	0.89[EUR][1000 genomes]
rs12758681	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12758819	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12759119	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1466468	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1480101	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1480107	0.89[EUR][1000 genomes]
rs1553447	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.94[TSI][hapmap]
rs1604777	0.95[CHB][hapmap];0.84[CHD][hapmap]
rs16844408	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16844602	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs16858926	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1842332	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1847906	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1847907	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2035302	0.89[EUR][1000 genomes]
rs34051059	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34115920	0.86[EUR][1000 genomes]
rs34248528	0.89[EUR][1000 genomes]
rs34256167	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34304596	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34305765	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34436845	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34468096	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34517951	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34530213	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34737903	0.86[EUR][1000 genomes]
rs34764920	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34766551	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34778535	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34937935	0.86[EUR][1000 genomes]
rs35150136	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35161243	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35181350	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35352581	0.86[EUR][1000 genomes]
rs35553993	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35852721	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35948433	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36053633	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4319288	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4623662	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4653413	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4653607	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4653608	0.89[EUR][1000 genomes]
rs4653610	0.89[EUR][1000 genomes]
rs4653628	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.94[TSI][hapmap]
rs55680010	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55738724	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55770610	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56150737	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56280792	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56332582	0.86[EUR][1000 genomes]
rs57650955	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs581675	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap]
rs583098	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs61849800	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61849836	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61851475	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61851476	0.82[EUR][1000 genomes]
rs61851478	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61851479	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61851481	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61851487	0.85[EUR][1000 genomes]
rs61851489	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61851518	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61851519	0.89[EUR][1000 genomes]
rs61851520	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs621210	0.85[EUR][1000 genomes]
rs622158	0.85[EUR][1000 genomes]
rs633544	0.85[EUR][1000 genomes]
rs633994	0.84[EUR][1000 genomes]
rs634342	0.86[EUR][1000 genomes]
rs634895	0.85[EUR][1000 genomes]
rs638672	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap]
rs661753	0.86[EUR][1000 genomes]
rs6666735	0.88[EUR][1000 genomes]
rs669326	0.86[EUR][1000 genomes]
rs6693785	0.86[EUR][1000 genomes]
rs672951	1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap]
rs674025	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs675571	0.86[EUR][1000 genomes]
rs686493	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs71646708	0.86[EUR][1000 genomes]
rs72748625	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7536245	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7541259	0.89[EUR][1000 genomes]
rs7555756	0.89[EUR][1000 genomes]
rs9887766	0.89[EUR][1000 genomes]
rs9887975	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv524461	chr1:225304331-225347689	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv468205	chr1:225304971-225476025	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv549264	chr1:225304971-225476025	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225275600-225312600	Weak transcription	Ovary	ovary
2	chr1:225298000-225311800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:225299800-225314200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:225300400-225311800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:225301800-225355800	Weak transcription	Pancreas	Pancrea
6	chr1:225309800-225313000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:225310400-225315400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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