Variant report

Variant	rs16844689
Chromosome Location	chr1:225521282-225521283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10047221	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs10495236	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs10495238	1.00[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915814	0.88[ASN][1000 genomes]
rs11580348	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs11585543	0.95[ASN][1000 genomes]
rs12408441	0.89[ASN][1000 genomes]
rs12408521	0.91[CEU][hapmap]
rs12734615	0.85[EUR][1000 genomes]
rs12744508	0.84[ASN][1000 genomes]
rs12754197	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12759119	0.88[CEU][hapmap];0.83[MKK][hapmap]
rs1480101	0.91[CEU][hapmap]
rs1553447	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs16844602	0.88[CEU][hapmap]
rs16844752	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs16844770	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs16844772	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs1842332	0.88[CEU][hapmap]
rs34809641	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35833434	0.85[EUR][1000 genomes]
rs4459070	0.80[ASN][1000 genomes]
rs4539098	0.89[ASN][1000 genomes]
rs4653418	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs4653420	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap]
rs4653628	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs55794003	0.85[EUR][1000 genomes]
rs581675	0.88[CEU][hapmap]
rs583098	0.88[CEU][hapmap]
rs58840178	0.88[ASN][1000 genomes]
rs60228869	0.92[ASN][1000 genomes]
rs61850032	0.86[ASN][1000 genomes]
rs638672	0.88[CEU][hapmap]
rs6686051	0.89[ASN][1000 genomes]
rs672951	0.88[CEU][hapmap]
rs674025	0.91[CEU][hapmap]
rs686493	0.91[CEU][hapmap]
rs7523005	0.87[ASN][1000 genomes]
rs7536245	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945672	chr1:225339532-225561349	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873226	chr1:225347689-225555602	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1805729	chr1:225404951-225526778	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2757774	chr1:225404951-225526778	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759002	chr1:225404951-225526778	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv428312	chr1:225404951-225526778	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3370511	chr1:225520629-225525227	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225507200-225522800	Weak transcription	Fetal Kidney	kidney

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