Variant report

Variant	rs16845159
Chromosome Location	chr1:172909392-172909393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172908894..172911352-chr1:172913551..172915186,2	MCF-7	breast:

rs_ID	r²[population]
rs10489275	0.96[YRI][hapmap]
rs16845151	1.00[ASW][hapmap];0.91[YRI][hapmap]
rs56100238	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6698936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7524172	0.82[AFR][1000 genomes]
rs7550931	0.91[YRI][hapmap];0.82[AFR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172903600-172914200	Weak transcription	Aorta	Aorta
2	chr1:172904000-172909400	Weak transcription	HSMMtube	muscle
3	chr1:172904200-172909800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:172904600-172909400	Weak transcription	HMEC	breast
5	chr1:172905400-172910600	Weak transcription	Left Ventricle	heart
6	chr1:172905600-172909600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:172905600-172916000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:172906000-172910600	Weak transcription	Spleen	Spleen
9	chr1:172906000-172910600	Weak transcription	A549	lung
10	chr1:172907200-172911200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:172907400-172911200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:172907400-172911200	Enhancers	NHDF-Ad	bronchial
13	chr1:172907600-172911400	Enhancers	NHLF	lung
14	chr1:172908400-172909400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:172908400-172909600	Enhancers	Primary B cells from peripheral blood	blood
16	chr1:172908400-172910800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:172908400-172911200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:172908400-172911200	Enhancers	Fetal Stomach	stomach
19	chr1:172908600-172909600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:172908600-172909800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:172908600-172910200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:172908800-172910000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr1:172908800-172910800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:172908800-172910800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr1:172908800-172910800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:172909000-172910000	Weak transcription	Lung	lung
27	chr1:172909000-172910000	Weak transcription	Pancreas	Pancrea
28	chr1:172909200-172910000	Enhancers	NHEK	skin
29	chr1:172909200-172910200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:172909200-172911400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr1:172909200-172911400	Enhancers	Colon Smooth Muscle	Colon
32	chr1:172909200-172911400	Enhancers	NH-A	brain

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