Variant report

Variant	rs16845169
Chromosome Location	chr1:172915703-172915704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10489275	1.00[AMR][1000 genomes]
rs16845119	0.82[AFR][1000 genomes]
rs16845151	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4615873	1.00[AMR][1000 genomes]
rs6658802	1.00[AMR][1000 genomes]
rs73046026	1.00[AMR][1000 genomes]
rs73046030	1.00[AMR][1000 genomes]
rs73049845	1.00[AMR][1000 genomes]
rs7416404	1.00[AMR][1000 genomes]
rs7524172	1.00[AMR][1000 genomes]
rs7548612	1.00[AMR][1000 genomes]
rs7550854	1.00[AMR][1000 genomes]
rs7550931	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172905600-172916000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172910800-172916200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:172911200-172915800	Weak transcription	NHDF-Ad	bronchial
4	chr1:172911200-172916000	Weak transcription	HSMMtube	muscle
5	chr1:172911200-172916200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:172911200-172917000	Weak transcription	Fetal Stomach	stomach
7	chr1:172911200-172917600	Weak transcription	Fetal Lung	lung
8	chr1:172911400-172916000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:172911400-172916000	Weak transcription	NH-A	brain
10	chr1:172913600-172919200	Enhancers	HUVEC	blood vessel
11	chr1:172914600-172917800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:172914800-172916000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:172915000-172917000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:172915000-172918000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:172915200-172924600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr1:172915400-172918600	Enhancers	Dnd41	blood
17	chr1:172915600-172917200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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