Variant report

Variant	rs16848890
Chromosome Location	chr2:213461841-213461842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1878566	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs4673668	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6717685	0.82[ASN][1000 genomes]
rs990208	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213458000-213462600	Weak transcription	NHEK	skin
2	chr2:213460200-213463000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213460400-213462200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:213460400-213462600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:213460800-213462200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:213461600-213462400	Weak transcription	HMEC	breast
7	chr2:213461600-213462600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:213461600-213462800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:213461800-213462600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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