Variant report

Variant	rs16849010
Chromosome Location	chr2:213512384-213512385
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10497980	0.94[ASN][1000 genomes]
rs16848937	0.87[ASN][1000 genomes]
rs16848957	0.87[ASN][1000 genomes]
rs16848991	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220025	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371618	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6717685	0.83[ASN][1000 genomes]
rs938785	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9750629	0.83[ASN][1000 genomes]
rs990208	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213510800-213513600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:213511000-213512400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213511000-213512400	Enhancers	NHLF	lung
4	chr2:213511200-213512400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:213511200-213512400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:213511200-213512400	Enhancers	HMEC	breast
7	chr2:213511200-213512400	Enhancers	HSMMtube	muscle
8	chr2:213511200-213512400	Enhancers	NHDF-Ad	bronchial
9	chr2:213511200-213512400	Enhancers	NHEK	skin
10	chr2:213511400-213512400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:213512000-213512400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:213512000-213512400	Enhancers	HSMM	muscle
13	chr2:213512000-213512600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:213512200-213513600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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