Variant report

Variant	rs16852811
Chromosome Location	chr3:142629489-142629490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16852779	0.93[ASN][1000 genomes]
rs2608070	0.84[YRI][hapmap]
rs6783831	0.91[AFR][1000 genomes]
rs6783921	0.91[AFR][1000 genomes]
rs72993787	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72997693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72997694	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7635853	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142623400-142630200	Weak transcription	Left Ventricle	heart
2	chr3:142624000-142631200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:142624200-142635000	Weak transcription	Osteobl	bone
4	chr3:142624600-142630200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:142625400-142633200	Weak transcription	K562	blood
6	chr3:142628000-142629800	Enhancers	Aorta	Aorta
7	chr3:142628000-142632800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:142628200-142634000	Weak transcription	Placenta	Placenta
9	chr3:142628800-142629600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:142628800-142631200	Enhancers	Right Atrium	heart
11	chr3:142629000-142629600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:142629000-142630200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:142629200-142629600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:142629200-142631200	Enhancers	Ovary	ovary
15	chr3:142629400-142629800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:142629400-142629800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr3:142629400-142629800	Enhancers	HSMMtube	muscle
18	chr3:142629400-142630000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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