Variant report

Variant	rs16857212
Chromosome Location	chr2:11264475-11264476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:29)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:11261636..11264793-chr2:11267057..11269969,4	MCF-7	breast:
2	chr2:11212005..11213742-chr2:11263802..11265970,2	MCF-7	breast:
3	chr2:10983477..10986559-chr2:11261395..11265674,4	MCF-7	breast:
4	chr2:10980632..10983629-chr2:11264384..11266623,2	MCF-7	breast:
5	chr2:11048727..11055858-chr2:11258107..11267123,21	MCF-7	breast:
6	chr2:10972139..10973203-chr2:11264030..11264892,6	MCF-7	breast:
7	chr2:10971346..10973011-chr2:11261747..11264906,3	MCF-7	breast:
8	chr2:11213548..11215079-chr2:11263052..11265124,2	MCF-7	breast:
9	chr2:11263766..11266286-chr2:11293280..11295387,2	K562	blood:
10	chr2:10975148..10976078-chr2:11264349..11265166,4	K562	blood:
11	chr2:11238214..11244340-chr2:11257890..11264600,7	MCF-7	breast:
12	chr2:10972176..10973061-chr2:11264286..11265264,5	K562	blood:
13	chr2:11034486..11035032-chr2:11264309..11264968,2	K562	blood:
14	chr2:11239064..11239861-chr2:11264270..11265270,5	MCF-7	breast:
15	chr2:10972156..10973242-chr2:11264321..11265184,4	MCF-7	breast:
16	chr2:11255497..11258493-chr2:11262970..11265003,5	MCF-7	breast:
17	chr2:11073057..11076699-chr2:11262086..11264690,5	MCF-7	breast:
18	chr2:10966905..10968435-chr2:11263818..11265795,2	MCF-7	breast:
19	chr2:11259209..11264924-chr2:11678223..11686597,16	MCF-7	breast:
20	chr2:11239059..11239959-chr2:11264229..11264821,2	MCF-7	breast:
21	chr2:11263419..11265242-chr2:11621241..11623957,2	MCF-7	breast:
22	chr2:10975343..10976058-chr2:11264316..11264864,2	MCF-7	breast:
23	chr2:11213355..11214082-chr2:11264187..11265377,5	MCF-7	breast:
24	chr2:11259220..11266280-chr2:11670518..11676450,12	MCF-7	breast:
25	chr2:11238958..11239920-chr2:11264340..11265062,2	K562	blood:
26	chr2:10971067..10979892-chr2:11260331..11267146,21	MCF-7	breast:
27	chr2:11051760..11052465-chr2:11264250..11265188,2	MCF-7	breast:
28	chr2:10974905..10976130-chr2:11264208..11265240,12	MCF-7	breast:
29	chr2:11262963..11264674-chr2:11294364..11296583,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ROCK2-3	chr2:11264345-11264911	ENSG00000145063
2	lnc-ROCK2-3	chr2:11263457-11264911	NONHSAT069141
3	lnc-ROCK2-3	chr2:11264149-11264911	NONHSAT069142

No data

Variant related genes	Relation type
ENSG00000264010	Chromatin interaction
ENSG00000196208	Chromatin interaction
ENSG00000143870	Chromatin interaction
ENSG00000162975	Chromatin interaction
ENSG00000226080	Chromatin interaction
ENSG00000162976	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16857295	1.00[EUR][1000 genomes]
rs2037105	1.00[EUR][1000 genomes]
rs58092863	1.00[EUR][1000 genomes]
rs58855966	1.00[EUR][1000 genomes]
rs61646530	1.00[EUR][1000 genomes]
rs73175663	1.00[EUR][1000 genomes]
rs73175666	1.00[EUR][1000 genomes]
rs73175691	1.00[EUR][1000 genomes]
rs73187657	1.00[EUR][1000 genomes]
rs73187662	1.00[EUR][1000 genomes]
rs73187664	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7591945	1.00[EUR][1000 genomes]
rs868393	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520789	chr2:11259067-11312224	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11262000-11264800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:11262200-11264600	Weak transcription	Stomach Mucosa	stomach
3	chr2:11262200-11269800	Weak transcription	Ovary	ovary
4	chr2:11262600-11264600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:11262800-11268600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:11262800-11269600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:11263000-11268400	Weak transcription	HMEC	breast
8	chr2:11263400-11264600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:11263400-11268000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:11263400-11269800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:11263600-11269800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:11263800-11264600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:11263800-11268000	Weak transcription	Spleen	Spleen
14	chr2:11264000-11264600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:11264000-11264800	Bivalent Enhancer	Placenta	Placenta
16	chr2:11264200-11264600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:11264200-11265000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr2:11264400-11264600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
19	chr2:11264400-11264600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr2:11264400-11264600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
21	chr2:11264400-11264800	Enhancers	H1 Cell Line	embryonic stem cell

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