Variant report

Variant	rs1686410
Chromosome Location	chr5:117003097-117003098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10036241	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10043080	1.00[CHB][hapmap]
rs1686407	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1686409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2416472	0.84[AMR][1000 genomes]
rs367073	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs367474	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs371223	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs373580	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs373736	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs374104	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs374657	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs416932	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs429251	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs863993	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016664	chr5:116888074-117181273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1019332	chr5:116888074-117248632	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117001200-117003400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:117001600-117003200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:117001600-117003200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:117001800-117003200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:117002000-117003200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:117002600-117003200	Enhancers	Fetal Intestine Large	intestine
7	chr5:117002600-117003600	Enhancers	Fetal Intestine Small	intestine
8	chr5:117003000-117003200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:117003000-117003600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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