Variant report
| Variant | rs16864456 |
|---|---|
| Chromosome Location | chr2:177654469-177654470 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:177621854..177624044-chr2:177654203..177657140,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10184702 | 1.00[CHB][hapmap] |
| rs10184742 | 0.86[JPT][hapmap] |
| rs10197209 | 1.00[CHB][hapmap] |
| rs10497573 | 1.00[CHB][hapmap] |
| rs12469347 | 1.00[CHB][hapmap] |
| rs12693105 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1437725 | 1.00[CHB][hapmap] |
| rs1513886 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1533303 | 1.00[CHB][hapmap] |
| rs1534472 | 1.00[CHB][hapmap] |
| rs1545138 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs16864479 | 1.00[CHB][hapmap] |
| rs2221939 | 0.86[JPT][hapmap] |
| rs3731798 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4893917 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs55681572 | 0.92[ASN][1000 genomes] |
| rs56234839 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6433615 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6740977 | 0.83[ASN][1000 genomes] |
| rs72936904 | 0.88[ASN][1000 genomes] |
| rs7588841 | 1.00[CHB][hapmap] |
| rs7601162 | 0.83[ASN][1000 genomes] |
| rs840698 | 1.00[CHB][hapmap] |
| rs840699 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527737 | chr2:177538266-177692572 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv583686 | chr2:177538266-177692572 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1006500 | chr2:177548521-177707097 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:177628800-177655400 | Weak transcription | Ovary | ovary |
| 2 | chr2:177654400-177655000 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
