Variant report

Variant	rs16866876
Chromosome Location	chr2:180506560-180506561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10497544	1.00[CEU][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11903765	1.00[YRI][hapmap]
rs12612821	0.84[ASN][1000 genomes]
rs12622221	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs12693196	0.89[MEX][hapmap]
rs13004211	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs13009601	0.90[CHD][hapmap];0.89[MEX][hapmap]
rs13014208	1.00[YRI][hapmap]
rs13035781	0.89[CHB][hapmap]
rs1356065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1356066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399686	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1399687	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1515274	0.89[CHB][hapmap];0.95[CHD][hapmap];0.94[MEX][hapmap];0.85[ASN][1000 genomes]
rs1515277	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1515278	1.00[CEU][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1554103	0.82[JPT][hapmap]
rs16866822	0.81[CHD][hapmap];1.00[MEX][hapmap]
rs16866832	0.89[MEX][hapmap]
rs16866842	0.81[CHD][hapmap];1.00[MEX][hapmap]
rs16866857	0.84[CHB][hapmap]
rs16866865	0.89[CHB][hapmap]
rs16866871	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs2367891	0.80[ASN][1000 genomes]
rs28792088	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2887110	0.89[MEX][hapmap]
rs3106693	0.82[JPT][hapmap]
rs3106694	0.82[JPT][hapmap]
rs36017881	0.84[ASN][1000 genomes]
rs62176301	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62176328	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62176331	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62176332	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62176334	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6741320	0.82[JPT][hapmap]
rs6756679	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7424112	1.00[YRI][hapmap]
rs7581924	0.90[CHD][hapmap];0.84[MEX][hapmap]
rs7601398	0.84[CHB][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180502200-180510200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:180502400-180509600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180502400-180511600	Weak transcription	Fetal Heart	heart
4	chr2:180505800-180506800	Active TSS	Fetal Kidney	kidney
5	chr2:180506000-180506800	Enhancers	Fetal Brain Female	brain

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