Variant report

Variant	rs16866945
Chromosome Location	chr2:180584171-180584172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180584134..180586759-chr2:180588333..180591322,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10177883	0.81[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs10497544	1.00[ASW][hapmap]
rs12052765	0.80[CEU][hapmap]
rs12053119	1.00[ASW][hapmap];0.80[CEU][hapmap]
rs12465379	0.80[CEU][hapmap]
rs12467122	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs12473571	1.00[ASW][hapmap];0.80[CEU][hapmap]
rs13407248	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1385972	0.80[CEU][hapmap]
rs1462208	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs1515294	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16866822	1.00[ASW][hapmap]
rs16866842	1.00[ASW][hapmap]
rs16866933	0.88[MEX][hapmap]
rs16866934	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs16866936	0.80[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs16866942	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16866943	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16866944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16866953	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs16866963	0.80[CEU][hapmap]
rs16866986	0.80[CEU][hapmap]
rs16866991	0.80[CEU][hapmap]
rs17496658	0.81[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs17499149	0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs17499156	0.81[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs1964081	0.94[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2008230	1.00[LWK][hapmap]
rs2840142	0.91[EUR][1000 genomes]
rs56142641	0.89[EUR][1000 genomes]
rs58143036	0.88[EUR][1000 genomes]
rs59431424	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59642995	0.94[ASN][1000 genomes]
rs61200535	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73973703	0.90[EUR][1000 genomes]
rs746701	1.00[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs7559882	0.94[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap];0.87[TSI][hapmap]
rs7577307	0.81[CEU][hapmap]
rs7582108	0.87[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7584651	0.96[ASN][1000 genomes]
rs7584968	0.96[ASN][1000 genomes]
rs7592797	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[MKK][hapmap]
rs7607561	1.00[ASW][hapmap];0.80[CEU][hapmap]
rs881737	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180582400-180585600	Weak transcription	Right Atrium	heart
2	chr2:180583800-180584400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr2:180584000-180584200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180584000-180584200	Enhancers	HepG2	liver

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