Variant report
| Variant | rs16866968 |
|---|---|
| Chromosome Location | chr2:180597896-180597897 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1139 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12052744 | 0.88[ASN][1000 genomes] |
| rs12052765 | 0.96[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs12053119 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs12465379 | 0.96[CHB][hapmap];0.95[JPT][hapmap] |
| rs12472888 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs12473571 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1385972 | 0.96[CHB][hapmap];1.00[JPT][hapmap] |
| rs1533384 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs16866963 | 0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs16866978 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16866986 | 0.96[CHB][hapmap];1.00[JPT][hapmap] |
| rs16866987 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16866989 | 0.96[CHB][hapmap];1.00[JPT][hapmap] |
| rs16866991 | 0.91[CHB][hapmap];0.95[JPT][hapmap] |
| rs16866992 | 0.87[CHB][hapmap];0.91[JPT][hapmap] |
| rs356407 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs356413 | 0.91[ASN][1000 genomes] |
| rs357699 | 0.80[ASN][1000 genomes] |
| rs55728092 | 0.89[ASN][1000 genomes] |
| rs57390308 | 0.86[ASN][1000 genomes] |
| rs58217303 | 0.92[ASN][1000 genomes] |
| rs7574345 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs7592797 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs7607561 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002305 | chr2:180568558-180812846 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
