Variant report

Variant	rs16867790
Chromosome Location	chr5:15852651-15852652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10520826	0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs16867783	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs16867796	0.81[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867806	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs16867819	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs2174438	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs55896316	0.86[AFR][1000 genomes]
rs6894588	0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062124	0.81[AFR][1000 genomes]
rs73062151	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062160	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7713929	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15842400-15853600	Weak transcription	Fetal Stomach	stomach
2	chr5:15849800-15854600	Enhancers	Fetal Heart	heart
3	chr5:15850400-15853800	Enhancers	Adipose Nuclei	Adipose
4	chr5:15851200-15856400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:15851400-15852800	Enhancers	Brain Substantia Nigra	brain
6	chr5:15851400-15854600	Enhancers	Fetal Lung	lung
7	chr5:15851400-15856400	Weak transcription	Aorta	Aorta
8	chr5:15851600-15852800	Enhancers	HUVEC	blood vessel
9	chr5:15851600-15853000	Weak transcription	Colon Smooth Muscle	Colon
10	chr5:15851600-15853200	Weak transcription	Spleen	Spleen
11	chr5:15851800-15870400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:15852000-15852800	Enhancers	Ovary	ovary
13	chr5:15852200-15853200	Weak transcription	Right Ventricle	heart
14	chr5:15852400-15854000	Enhancers	Liver	Liver
15	chr5:15852600-15853000	Weak transcription	Left Ventricle	heart
16	chr5:15852600-15853000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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