Variant report

Variant	rs16868758
Chromosome Location	chr5:16537404-16537405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16529383..16532195-chr5:16534622..16538676,4	MCF-7	breast:
2	chr5:16536135..16537892-chr5:16539475..16542072,2	K562	blood:
3	chr5:16535725..16538550-chr5:16541937..16543644,2	K562	blood:
4	chr5:16527152..16530063-chr5:16533839..16538809,7	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10053126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334483	1.00[CHD][hapmap]
rs334484	1.00[CHD][hapmap]
rs334493	1.00[CHD][hapmap]
rs403186	1.00[CHD][hapmap]
rs437407	1.00[CHD][hapmap]
rs6883256	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16516000-16540800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:16521600-16539600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:16522400-16567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:16523400-16540800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:16523800-16539000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:16523800-16540800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:16525000-16540800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:16525000-16542000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:16525200-16540400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:16525600-16539200	Weak transcription	Gastric	stomach
11	chr5:16529000-16538000	Weak transcription	Fetal Brain Female	brain
12	chr5:16532000-16538000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr5:16532000-16538200	Weak transcription	Colonic Mucosa	Colon
14	chr5:16532000-16538200	Weak transcription	Fetal Intestine Large	intestine
15	chr5:16532200-16538400	Weak transcription	Small Intestine	intestine
16	chr5:16532200-16542000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:16533200-16543200	Enhancers	Fetal Heart	heart
18	chr5:16533600-16539200	Weak transcription	Aorta	Aorta
19	chr5:16534200-16541800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:16534400-16540200	Enhancers	Fetal Muscle Leg	muscle
21	chr5:16534400-16541200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr5:16535400-16538200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr5:16535400-16539400	Enhancers	Left Ventricle	heart
24	chr5:16535400-16539800	Enhancers	Fetal Muscle Trunk	muscle
25	chr5:16535400-16543400	Enhancers	Brain Cingulate Gyrus	brain
26	chr5:16535600-16541200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:16535600-16546000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr5:16536000-16538200	Genic enhancers	Primary T cells from cord blood	blood
29	chr5:16536200-16541200	Enhancers	Brain Angular Gyrus	brain
30	chr5:16536400-16539000	Enhancers	Psoas Muscle	Psoas
31	chr5:16536400-16541200	Enhancers	Brain Hippocampus Middle	brain
32	chr5:16536400-16541400	Enhancers	Brain Anterior Caudate	brain
33	chr5:16536600-16537600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr5:16536800-16537800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:16536800-16537800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr5:16536800-16538200	Enhancers	Right Atrium	heart
37	chr5:16536800-16538400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr5:16536800-16538600	Weak transcription	NHDF-Ad	bronchial
39	chr5:16536800-16539000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:16536800-16539000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr5:16536800-16539000	Weak transcription	HMEC	breast
42	chr5:16536800-16541200	Enhancers	Brain Substantia Nigra	brain
43	chr5:16536800-16552800	Weak transcription	Thymus	Thymus
44	chr5:16537000-16538000	Enhancers	Fetal Brain Male	brain
45	chr5:16537000-16538400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr5:16537000-16539000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr5:16537000-16539000	Weak transcription	NH-A	brain
48	chr5:16537000-16539000	Weak transcription	NHEK	skin
49	chr5:16537200-16537800	Weak transcription	Right Ventricle	heart
50	chr5:16537200-16538800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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