Variant report

Variant	rs16868760
Chromosome Location	chr5:16539806-16539807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16536135..16537892-chr5:16539475..16542072,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10053126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs334483	1.00[CHD][hapmap]
rs334484	1.00[CHD][hapmap]
rs334493	1.00[CHD][hapmap]
rs403186	1.00[CHD][hapmap]
rs437407	1.00[CHD][hapmap]
rs6883256	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16516000-16540800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:16522400-16567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:16523400-16540800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:16523800-16540800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:16525000-16540800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr5:16525000-16542000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:16525200-16540400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr5:16532200-16542000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:16533200-16543200	Enhancers	Fetal Heart	heart
10	chr5:16534200-16541800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr5:16534400-16540200	Enhancers	Fetal Muscle Leg	muscle
12	chr5:16534400-16541200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:16535400-16543400	Enhancers	Brain Cingulate Gyrus	brain
14	chr5:16535600-16541200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:16535600-16546000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:16536200-16541200	Enhancers	Brain Angular Gyrus	brain
17	chr5:16536400-16541200	Enhancers	Brain Hippocampus Middle	brain
18	chr5:16536400-16541400	Enhancers	Brain Anterior Caudate	brain
19	chr5:16536800-16541200	Enhancers	Brain Substantia Nigra	brain
20	chr5:16536800-16552800	Weak transcription	Thymus	Thymus
21	chr5:16537600-16542200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr5:16538200-16540400	Enhancers	Fetal Intestine Large	intestine
23	chr5:16538200-16540600	Weak transcription	Primary T cells from cord blood	blood
24	chr5:16538200-16540600	Enhancers	Fetal Intestine Small	intestine
25	chr5:16538200-16541200	Enhancers	HSMM	muscle
26	chr5:16538200-16541200	Enhancers	HSMMtube	muscle
27	chr5:16538400-16540400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr5:16538400-16540600	Enhancers	Duodenum Mucosa	Duodenum
29	chr5:16538400-16541400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr5:16538400-16542200	Weak transcription	Colonic Mucosa	Colon
31	chr5:16538600-16540400	Enhancers	NHDF-Ad	bronchial
32	chr5:16538600-16540600	Enhancers	Adipose Nuclei	Adipose
33	chr5:16538600-16546400	Weak transcription	Right Ventricle	heart
34	chr5:16539000-16541000	Enhancers	Liver	Liver
35	chr5:16539000-16541000	Enhancers	NHLF	lung
36	chr5:16539000-16541200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr5:16539000-16541200	Enhancers	NH-A	brain
38	chr5:16539000-16541200	Enhancers	Osteobl	bone
39	chr5:16539000-16541400	Enhancers	HMEC	breast
40	chr5:16539200-16540000	Enhancers	Fetal Lung	lung
41	chr5:16539200-16541000	Enhancers	Right Atrium	heart
42	chr5:16539200-16541200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:16539200-16541200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr5:16539200-16554400	Weak transcription	Small Intestine	intestine
45	chr5:16539400-16540000	Enhancers	Psoas Muscle	Psoas
46	chr5:16539400-16540800	Weak transcription	Left Ventricle	heart
47	chr5:16539600-16540000	Enhancers	HepG2	liver
48	chr5:16539600-16540400	Enhancers	Placenta Amnion	Placenta Amnion
49	chr5:16539600-16540600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:16539600-16541200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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