Variant report

Variant	rs16871759
Chromosome Location	chr7:105252812-105252813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:105251746..105255954-chr7:105257443..105260701,4	K562	blood:
2	chr7:105251746..105255342-chr7:105256570..105259022,4	K562	blood:
3	chr7:105251738..105254078-chr7:105262273..105265151,2	MCF-7	breast:
4	chr7:105247631..105249453-chr7:105250836..105253127,2	MCF-7	breast:
5	chr7:105247461..105250201-chr7:105251005..105253745,3	MCF-7	breast:
6	chr7:105252403..105255268-chr7:105318435..105320403,2	K562	blood:
7	chr7:105244303..105247119-chr7:105251493..105253646,2	K562	blood:
8	chr7:105171182..105174088-chr7:105252216..105253843,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146776	Chromatin interaction
ENSG00000135249	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12535264	1.00[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.81[ASN][1000 genomes]
rs17150293	1.00[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.81[ASN][1000 genomes]
rs7777200	0.80[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105222200-105253000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:105239400-105289000	Weak transcription	Right Atrium	heart
3	chr7:105240400-105284400	Weak transcription	HSMMtube	muscle
4	chr7:105241800-105253200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:105241800-105253400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:105242000-105253800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:105242000-105254200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:105242200-105254000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:105242200-105263400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:105242200-105273800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:105242400-105254600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:105242800-105253200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:105243200-105253800	Weak transcription	Adipose Nuclei	Adipose
14	chr7:105243200-105253800	Weak transcription	Fetal Lung	lung
15	chr7:105243200-105253800	Weak transcription	NHLF	lung
16	chr7:105243200-105280200	Weak transcription	Stomach Mucosa	stomach
17	chr7:105243400-105253000	Weak transcription	Liver	Liver
18	chr7:105243400-105289200	Weak transcription	NHDF-Ad	bronchial
19	chr7:105244000-105261000	Weak transcription	Fetal Brain Male	brain
20	chr7:105244200-105253000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:105244400-105253600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:105244400-105254400	Weak transcription	Left Ventricle	heart
23	chr7:105244600-105253400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:105244600-105254200	Weak transcription	Aorta	Aorta
25	chr7:105244600-105254200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:105245000-105254000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr7:105245400-105254000	Weak transcription	Pancreas	Pancrea
28	chr7:105245600-105253800	Weak transcription	Colon Smooth Muscle	Colon
29	chr7:105245600-105253800	Weak transcription	Gastric	stomach
30	chr7:105245600-105254000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:105245800-105254000	Weak transcription	Right Ventricle	heart
32	chr7:105245800-105262800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr7:105246200-105253000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:105246200-105282600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr7:105247000-105308800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr7:105247200-105263600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:105247600-105253000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:105247800-105253000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:105247800-105253600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:105247800-105253800	Weak transcription	Ovary	ovary
41	chr7:105247800-105266400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:105248000-105253000	Weak transcription	Lung	lung
43	chr7:105248000-105278200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:105248600-105253000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr7:105249000-105253600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr7:105249000-105254000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:105249600-105253000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr7:105250400-105253000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr7:105250400-105266600	Strong transcription	Primary T cells from cord blood	blood
50	chr7:105250600-105259400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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