Variant report

Variant	rs16872277
Chromosome Location	chr6:12118562-12118563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12112236..12116140-chr6:12116213..12118749,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10498679	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs12176308	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12234132	0.82[JPT][hapmap]
rs3734271	0.96[ASN][1000 genomes]
rs3777754	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777758	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777762	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777769	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3777773	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3822926	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4467769	0.82[CHB][hapmap]
rs55718117	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6907440	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910959	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6916455	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6928420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6940075	1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826076	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72826081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72826086	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72826088	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72826091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751398	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296253	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9349068	0.82[JPT][hapmap]
rs9349095	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs9366970	1.00[JPT][hapmap]
rs9366972	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9366980	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369070	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs9369072	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs9369074	0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9369101	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369106	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380764	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9380837	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394517	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9394520	0.82[CHB][hapmap]
rs9394540	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394541	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870443	chr6:12096356-12125998	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:12071800-12120400	Weak transcription	HepG2	liver
3	chr6:12091000-12118800	Weak transcription	A549	lung
4	chr6:12091000-12130600	Weak transcription	Psoas Muscle	Psoas
5	chr6:12095600-12119200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:12103800-12119200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:12103800-12120400	Weak transcription	Small Intestine	intestine
8	chr6:12106000-12120600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:12106000-12120600	Weak transcription	Esophagus	oesophagus
10	chr6:12106200-12120400	Weak transcription	Fetal Kidney	kidney
11	chr6:12106800-12120400	Weak transcription	Gastric	stomach
12	chr6:12107400-12120400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:12107400-12124800	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:12107600-12120800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:12107800-12120600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:12108200-12120200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:12108400-12120400	Weak transcription	Colonic Mucosa	Colon
18	chr6:12108600-12120200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:12108600-12120400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:12110200-12120400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:12110800-12120400	Weak transcription	Hela-S3	cervix
22	chr6:12111200-12120400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:12111400-12120400	Weak transcription	Fetal Brain Male	brain
24	chr6:12112000-12119600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:12112000-12120200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:12112000-12120400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:12112000-12120400	Weak transcription	Fetal Lung	lung
28	chr6:12112200-12120200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:12112800-12119800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:12113200-12120200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:12113200-12120400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:12113400-12118600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:12113400-12120400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:12113400-12120400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:12113400-12120600	Weak transcription	Placenta	Placenta
36	chr6:12113600-12120200	Weak transcription	Lung	lung
37	chr6:12113600-12120400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:12113600-12120400	Weak transcription	Spleen	Spleen
39	chr6:12113800-12119200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:12113800-12121400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:12114000-12120200	Weak transcription	HUVEC	blood vessel
42	chr6:12114000-12120400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:12114000-12120400	Weak transcription	HMEC	breast
44	chr6:12114000-12120400	Weak transcription	NHEK	skin
45	chr6:12114000-12120400	Weak transcription	NHLF	lung
46	chr6:12114200-12120200	Weak transcription	K562	blood
47	chr6:12114200-12120400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:12114200-12120400	Weak transcription	HSMM	muscle
49	chr6:12114200-12120800	Weak transcription	NHDF-Ad	bronchial
50	chr6:12114200-12121000	Weak transcription	Muscle Satellite Cultured Cells	--

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