Variant report

Variant	rs16873424
Chromosome Location	chr7:103835752-103835753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103833476..103836240-chr7:103847903..103849703,2	K562	blood:
2	chr7:103832288..103834707-chr7:103835398..103837117,2	MCF-7	breast:
3	chr7:103831029..103833821-chr7:103834047..103836928,2	K562	blood:
4	chr7:103835421..103837340-chr7:103844960..103847432,2	K562	blood:
5	chr7:103156424..103158894-chr7:103835584..103837385,2	K562	blood:

Variant related genes	Relation type
ENSG00000164815	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10155973	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10230637	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10232393	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10238218	0.81[YRI][hapmap]
rs10245622	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10248278	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10250051	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10251561	0.83[MKK][hapmap]
rs10251976	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10260238	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263828	0.85[MKK][hapmap]
rs10275705	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10277637	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279675	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10279892	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10281636	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11489610	0.83[YRI][hapmap]
rs17159938	0.85[CEU][hapmap];0.95[YRI][hapmap]
rs2188287	0.85[CEU][hapmap]
rs2307409	0.81[MKK][hapmap]
rs55749110	0.89[EUR][1000 genomes]
rs55901574	0.92[EUR][1000 genomes]
rs56390129	0.94[EUR][1000 genomes]
rs57278162	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59290626	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6949887	0.92[ASW][hapmap];0.87[CEU][hapmap];0.92[GIH][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6971709	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73415708	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415709	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415730	0.94[AFR][1000 genomes]
rs73415735	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73415737	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73417705	0.81[AFR][1000 genomes]
rs7777906	0.83[YRI][hapmap]
rs7784705	0.81[YRI][hapmap]
rs9656093	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019640	chr7:103813522-103884705	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv1026481	chr7:103813522-103890770	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	esv2762692	chr7:103813522-103890782	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
4	nsv526062	chr7:103817597-103891085	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	nsv527105	chr7:103826002-103836132	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
2	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
3	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
4	chr7:103796400-103843600	Weak transcription	Fetal Brain Male	brain
5	chr7:103797200-103847000	Weak transcription	Fetal Heart	heart
6	chr7:103802200-103838600	Weak transcription	Psoas Muscle	Psoas
7	chr7:103809400-103838200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:103815400-103839200	Weak transcription	Colonic Mucosa	Colon
9	chr7:103815600-103838400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:103816000-103846200	Weak transcription	Stomach Mucosa	stomach
11	chr7:103816800-103836600	Weak transcription	Brain Substantia Nigra	brain
12	chr7:103818600-103839600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:103819000-103838400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:103821800-103839400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:103822000-103845400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:103822200-103836400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr7:103822600-103839600	Strong transcription	K562	blood
18	chr7:103823000-103839200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:103823000-103839200	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:103823800-103838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:103823800-103839200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:103823800-103839200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:103823800-103839200	Weak transcription	Esophagus	oesophagus
24	chr7:103824200-103838400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr7:103824400-103837200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:103824400-103838600	Weak transcription	Brain Angular Gyrus	brain
27	chr7:103825200-103839600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:103825600-103838400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:103826400-103844400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr7:103826800-103844600	Strong transcription	Adipose Nuclei	Adipose
31	chr7:103827400-103844600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:103828600-103837400	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:103829600-103839200	Weak transcription	Fetal Intestine Small	intestine
34	chr7:103830000-103835800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:103830000-103836600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:103830000-103837600	Weak transcription	Brain Germinal Matrix	brain
37	chr7:103830000-103838200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr7:103830000-103838400	Weak transcription	Lung	lung
39	chr7:103830000-103839200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:103830000-103839200	Weak transcription	Pancreas	Pancrea
41	chr7:103830000-103839600	Weak transcription	NHLF	lung
42	chr7:103830200-103835800	Weak transcription	Left Ventricle	heart
43	chr7:103830200-103839000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:103830200-103839000	Weak transcription	Fetal Stomach	stomach
45	chr7:103830200-103839200	Strong transcription	Primary B cells from cord blood	blood
46	chr7:103830200-103839200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr7:103830200-103839200	Weak transcription	Gastric	stomach
48	chr7:103830400-103837800	Weak transcription	Osteobl	bone
49	chr7:103830400-103838000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr7:103830400-103838200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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