Variant report

Variant	rs16873711
Chromosome Location	chr6:13184467-13184468
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13184097..13187942-chr6:13192836..13196557,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1223541	0.85[YRI][hapmap]
rs1223545	0.90[YRI][hapmap]
rs6923461	0.83[AFR][1000 genomes]
rs9463499	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs9463532	0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs9473639	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9473648	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:13176400-13191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:13178800-13187200	Weak transcription	Spleen	Spleen
4	chr6:13178800-13191400	Weak transcription	Left Ventricle	heart
5	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:13179200-13184800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:13181400-13184600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:13181600-13190600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:13182000-13184800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:13182000-13184800	Enhancers	Brain Anterior Caudate	brain
11	chr6:13182000-13184800	Weak transcription	Stomach Mucosa	stomach
12	chr6:13182000-13187200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:13182000-13188000	Weak transcription	Fetal Stomach	stomach
14	chr6:13182000-13205400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
16	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
18	chr6:13182200-13192800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:13182800-13188200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:13182800-13188600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:13183000-13195200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:13183000-13207000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:13183800-13185400	Strong transcription	Lung	lung
24	chr6:13183800-13187000	Enhancers	Fetal Heart	heart
25	chr6:13184000-13185400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:13184000-13188600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:13184000-13190600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
29	chr6:13184200-13185200	Genic enhancers	Right Ventricle	heart
30	chr6:13184200-13185400	Strong transcription	Aorta	Aorta
31	chr6:13184200-13197000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:13184400-13185200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:13184400-13185400	Genic enhancers	Pancreas	Pancrea
34	chr6:13184400-13185600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:13184400-13186400	Weak transcription	Fetal Intestine Small	intestine

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