Variant report

Variant	rs16873780
Chromosome Location	chr6:13207968-13207969
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13203383..13206957-chr6:13207138..13210115,4	K562	blood:
2	chr6:13206187..13208549-chr6:13306945..13308625,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11754614	1.00[EUR][1000 genomes]
rs11755431	1.00[EUR][1000 genomes]
rs11756770	1.00[EUR][1000 genomes]
rs11756942	1.00[EUR][1000 genomes]
rs11757262	1.00[EUR][1000 genomes]
rs11758235	1.00[EUR][1000 genomes]
rs11759443	1.00[EUR][1000 genomes]
rs1223540	1.00[AMR][1000 genomes]
rs1223543	1.00[AMR][1000 genomes]
rs2439559	1.00[EUR][1000 genomes]
rs2496171	1.00[EUR][1000 genomes]
rs28495821	1.00[EUR][1000 genomes]
rs35114287	1.00[EUR][1000 genomes]
rs526661	1.00[EUR][1000 genomes]
rs60044512	1.00[AMR][1000 genomes]
rs60196827	1.00[AMR][1000 genomes]
rs60885957	1.00[AMR][1000 genomes]
rs6912427	1.00[EUR][1000 genomes]
rs6920849	1.00[EUR][1000 genomes]
rs73359121	1.00[EUR][1000 genomes]
rs7742713	1.00[EUR][1000 genomes]
rs9463696	1.00[EUR][1000 genomes]
rs9474025	1.00[EUR][1000 genomes]
rs9474036	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
3	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:13187400-13217400	Weak transcription	Right Atrium	heart
7	chr6:13191800-13210800	Weak transcription	Fetal Heart	heart
8	chr6:13192400-13216800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:13201400-13216200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:13201600-13209000	Weak transcription	Ovary	ovary
11	chr6:13201600-13215600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:13202400-13213200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:13202400-13218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:13203000-13216800	Weak transcription	Adipose Nuclei	Adipose
15	chr6:13203200-13230200	Weak transcription	Fetal Stomach	stomach
16	chr6:13203600-13217400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:13203800-13209000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:13204000-13209000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:13204600-13210200	Strong transcription	Stomach Smooth Muscle	stomach
20	chr6:13204800-13208200	Strong transcription	Lung	lung
21	chr6:13205000-13214400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:13205200-13208000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:13205200-13208600	Strong transcription	Left Ventricle	heart
24	chr6:13205400-13217400	Weak transcription	HSMM	muscle
25	chr6:13205800-13208200	Strong transcription	Pancreas	Pancrea
26	chr6:13205800-13209000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:13206200-13208600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:13206400-13211800	Weak transcription	Gastric	stomach
29	chr6:13206400-13211800	Weak transcription	Right Ventricle	heart
30	chr6:13206400-13217400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:13206400-13229800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:13206400-13230000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:13206800-13208600	Strong transcription	Primary hematopoietic stem cells	blood
34	chr6:13207000-13208200	Strong transcription	Brain Substantia Nigra	brain
35	chr6:13207000-13208400	Strong transcription	Brain Cingulate Gyrus	brain
36	chr6:13207200-13209000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:13207400-13208200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:13207800-13208200	Genic enhancers	Brain Anterior Caudate	brain
39	chr6:13207800-13211800	Weak transcription	Aorta	Aorta
40	chr6:13207800-13217400	Weak transcription	Brain Hippocampus Middle	brain

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