Variant report

Variant	rs16879246
Chromosome Location	chr8:110243010-110243011
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110234924..110237282-chr8:110242100..110245071,2	K562	blood:
2	chr8:110152393..110154757-chr8:110241965..110244257,2	MCF-7	breast:
3	chr8:110242575..110246884-chr8:110247305..110250446,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16879257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879265	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879274	0.88[AFR][1000 genomes]
rs16879322	0.85[AFR][1000 genomes]
rs4279563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4292664	0.88[AFR][1000 genomes]
rs6993107	0.88[AFR][1000 genomes]
rs6993565	0.88[AFR][1000 genomes]
rs7013591	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7013864	0.88[AFR][1000 genomes]
rs7814888	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7827882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834361	0.83[YRI][hapmap]
rs7839384	0.81[AFR][1000 genomes]
rs7840499	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7841543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891272	chr8:110217266-110268104	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv891274	chr8:110224047-110308776	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv891275	chr8:110224047-110319234	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891276	chr8:110232329-110308776	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110211200-110311600	Weak transcription	Right Ventricle	heart
2	chr8:110234800-110264200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr8:110235000-110251000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:110235400-110271400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:110235400-110275000	Weak transcription	Fetal Brain Male	brain
6	chr8:110235600-110244000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:110235800-110251200	Weak transcription	Fetal Intestine Large	intestine
8	chr8:110235800-110252600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:110236000-110264200	Weak transcription	Spleen	Spleen
10	chr8:110236000-110265400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr8:110236200-110244200	Weak transcription	Fetal Stomach	stomach
12	chr8:110236200-110264200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr8:110236200-110308800	Weak transcription	Thymus	Thymus
14	chr8:110236200-110309200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:110236400-110257400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:110236600-110244000	Weak transcription	Brain Angular Gyrus	brain
17	chr8:110236600-110245400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:110236600-110251200	Weak transcription	GM12878-XiMat	blood
19	chr8:110236600-110264200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr8:110236600-110344200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:110237000-110283800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr8:110237200-110271400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:110237600-110250800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:110237600-110259200	Weak transcription	Brain Anterior Caudate	brain
25	chr8:110237800-110254200	Weak transcription	Fetal Thymus	thymus
26	chr8:110237800-110254200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr8:110237800-110254800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr8:110237800-110264200	Weak transcription	Fetal Lung	lung
29	chr8:110237800-110271400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr8:110238000-110244000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:110238000-110311600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr8:110238200-110244000	Weak transcription	Aorta	Aorta
33	chr8:110238200-110246600	Weak transcription	Fetal Brain Female	brain
34	chr8:110238200-110250800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr8:110238200-110251200	Weak transcription	Primary B cells from cord blood	blood
36	chr8:110238200-110251200	Weak transcription	Left Ventricle	heart
37	chr8:110238200-110251400	Weak transcription	Adipose Nuclei	Adipose
38	chr8:110238200-110254200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr8:110238200-110264200	Weak transcription	Fetal Muscle Leg	muscle
40	chr8:110238200-110286600	Weak transcription	Ovary	ovary
41	chr8:110239200-110244200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:110239200-110245400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:110239200-110251400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr8:110239200-110257600	Weak transcription	Lung	lung
45	chr8:110239400-110244000	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr8:110239600-110243800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr8:110239600-110250800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr8:110239600-110255200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr8:110239600-110274400	Weak transcription	Pancreas	Pancrea
50	chr8:110239800-110254200	Weak transcription	Liver	Liver

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