Variant report

Variant	rs16879302
Chromosome Location	chr8:110333207-110333208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110325503..110327791-chr8:110330957..110333758,2	K562	blood:
2	chr8:110331957..110333774-chr8:110341680..110343638,2	K562	blood:
3	chr8:110332508..110334177-chr8:110336297..110338070,2	K562	blood:
4	chr8:110332010..110333583-chr8:110343833..110346768,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120526	Chromatin interaction
ENSG00000120533	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs16879261	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs16879277	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16879288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16879296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879319	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993593	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4489305	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58645331	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59395166	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs59606309	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs59943608	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs60785810	0.88[ASN][1000 genomes]
rs61245151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61479312	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs66514810	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs66540106	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs66582255	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66595116	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs66597282	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs66850941	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66894192	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs66993652	0.88[ASN][1000 genomes]
rs67013559	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67022633	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67131445	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67145203	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67220317	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67285523	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67650612	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67741834	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67743002	0.84[AFR][1000 genomes]
rs67793872	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67919153	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs67974558	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68134891	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6990184	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6994530	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72680756	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72682635	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72682688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73303253	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73303256	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73311376	0.88[ASN][1000 genomes]
rs73311383	0.82[ASN][1000 genomes]
rs73311385	0.88[ASN][1000 genomes]
rs73311386	0.88[ASN][1000 genomes]
rs73311387	0.88[ASN][1000 genomes]
rs73311394	0.88[ASN][1000 genomes]
rs73311400	0.88[ASN][1000 genomes]
rs73313204	0.88[ASN][1000 genomes]
rs7817013	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7823896	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110236600-110344200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:110284400-110344400	Weak transcription	Fetal Lung	lung
3	chr8:110288600-110344200	Weak transcription	Ovary	ovary
4	chr8:110293000-110343600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:110312000-110344000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:110312200-110342800	Weak transcription	Left Ventricle	heart
7	chr8:110312400-110344200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:110318400-110344000	Weak transcription	NHLF	lung
9	chr8:110318600-110342800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:110318800-110335200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:110319400-110344200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:110322000-110344200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:110323200-110335400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:110323200-110340000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:110323600-110335400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:110324000-110335600	Weak transcription	Thymus	Thymus
17	chr8:110324000-110345400	Weak transcription	Aorta	Aorta
18	chr8:110324200-110340400	Weak transcription	K562	blood
19	chr8:110324800-110344000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:110325200-110341400	Weak transcription	HSMM	muscle
21	chr8:110325200-110342000	Weak transcription	A549	lung
22	chr8:110325200-110344400	Weak transcription	Pancreas	Pancrea
23	chr8:110325200-110344400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr8:110325200-110344400	Weak transcription	Small Intestine	intestine
25	chr8:110325200-110344800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr8:110325400-110337400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:110325400-110344200	Weak transcription	Fetal Heart	heart
28	chr8:110325800-110337000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr8:110326600-110335200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:110326600-110344000	Weak transcription	Osteobl	bone
31	chr8:110327800-110338600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr8:110328000-110344400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:110328200-110333400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr8:110328200-110337800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr8:110328200-110339600	Weak transcription	HUVEC	blood vessel
36	chr8:110328200-110344200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr8:110328200-110345000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr8:110328800-110344200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:110329000-110343600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:110329400-110344200	Weak transcription	NHEK	skin
41	chr8:110329800-110334800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr8:110329800-110336200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr8:110330200-110342800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr8:110330600-110344400	Weak transcription	NH-A	brain
45	chr8:110330800-110344200	Weak transcription	NHDF-Ad	bronchial
46	chr8:110331400-110333400	Strong transcription	Primary T cells from cord blood	blood
47	chr8:110331400-110334000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr8:110331400-110334600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr8:110331400-110343800	Weak transcription	Fetal Stomach	stomach
50	chr8:110331600-110334800	Strong transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links