Variant report

Variant	rs16880151
Chromosome Location	chr8:110895169-110895170
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110747815..110748380-chr8:110895101..110895998,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10090049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10096412	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997465	1.00[ASN][1000 genomes]
rs12675834	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12679278	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12682174	0.81[AMR][1000 genomes]
rs1394941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs1394942	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1505650	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1505651	1.00[ASN][1000 genomes]
rs1505652	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap]
rs1505653	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1587943	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs16880131	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16880142	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16880145	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1809991	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2129035	0.86[ASN][1000 genomes]
rs2350411	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4389901	0.85[ASN][1000 genomes]
rs4585726	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735141	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735142	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62527996	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62527997	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62527998	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62527999	0.86[ASN][1000 genomes]
rs62528000	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62528031	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62528032	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62528037	0.83[ASN][1000 genomes]
rs6469287	0.93[ASN][1000 genomes]
rs7000312	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7013309	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814174	0.86[ASN][1000 genomes]
rs7824024	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7824730	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7833816	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7834319	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7845779	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs905962	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9773536	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033321	chr8:110826297-111131801	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1019284	chr8:110866196-111221890	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831421	chr8:110874634-111038295	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16880151	RGS17	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110892000-110895800	Weak transcription	Fetal Heart	heart
2	chr8:110893800-110896800	Weak transcription	Duodenum Mucosa	Duodenum

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