Variant report

Variant	rs16881980
Chromosome Location	chr8:34185222-34185223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1373802	0.81[EUR][1000 genomes]
rs16882013	0.91[AFR][1000 genomes]
rs16882016	0.87[AFR][1000 genomes]
rs16882075	0.90[EUR][1000 genomes]
rs16882130	1.00[EUR][1000 genomes]
rs28703850	1.00[EUR][1000 genomes]
rs55935531	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55958437	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61505297	0.81[EUR][1000 genomes]
rs73672188	0.81[EUR][1000 genomes]
rs73672192	0.81[EUR][1000 genomes]
rs73672194	0.81[EUR][1000 genomes]
rs73674307	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73674308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674310	0.91[AFR][1000 genomes]
rs73674323	0.87[AFR][1000 genomes]
rs7839209	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610931	chr8:34176474-34226215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34181800-34185400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:34182000-34185600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:34183400-34185400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:34184400-34186000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:34184400-34195800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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