Variant report

Variant	rs16883717
Chromosome Location	chr7:147559163-147559164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10232583	1.00[EUR][1000 genomes]
rs10234247	1.00[EUR][1000 genomes]
rs10248203	1.00[EUR][1000 genomes]
rs10249353	1.00[EUR][1000 genomes]
rs10252322	1.00[EUR][1000 genomes]
rs10255352	1.00[EUR][1000 genomes]
rs10261418	1.00[EUR][1000 genomes]
rs10261560	1.00[EUR][1000 genomes]
rs10263426	1.00[EUR][1000 genomes]
rs10270982	1.00[EUR][1000 genomes]
rs10281336	1.00[EUR][1000 genomes]
rs17170708	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17170710	1.00[EUR][1000 genomes]
rs17170712	1.00[EUR][1000 genomes]
rs17170713	1.00[EUR][1000 genomes]
rs17170715	1.00[EUR][1000 genomes]
rs17170722	1.00[EUR][1000 genomes]
rs17170724	1.00[EUR][1000 genomes]
rs17170726	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17170728	1.00[EUR][1000 genomes]
rs17170742	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs28371890	1.00[EUR][1000 genomes]
rs28407458	1.00[EUR][1000 genomes]
rs58534283	1.00[EUR][1000 genomes]
rs60522775	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651095	0.85[AFR][1000 genomes]
rs6651096	0.90[AFR][1000 genomes]
rs6947415	1.00[EUR][1000 genomes]
rs73462197	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv465193	chr7:147512619-147583680	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv608965	chr7:147512619-147583680	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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