Variant report

Variant	rs16884624
Chromosome Location	chr6:74998293-74998294
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11752920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754468	0.86[EUR][1000 genomes]
rs11758445	1.00[EUR][1000 genomes]
rs11759133	0.86[EUR][1000 genomes]
rs16884519	0.98[EUR][1000 genomes]
rs16884690	0.98[EUR][1000 genomes]
rs1817735	1.00[EUR][1000 genomes]
rs3898077	0.94[EUR][1000 genomes]
rs55768795	0.81[EUR][1000 genomes]
rs55784940	0.86[EUR][1000 genomes]
rs55962148	0.94[EUR][1000 genomes]
rs56020332	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56168817	0.98[EUR][1000 genomes]
rs56232317	0.94[EUR][1000 genomes]
rs57902919	0.89[AFR][1000 genomes]
rs67076726	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926572	0.98[EUR][1000 genomes]
rs72953763	1.00[EUR][1000 genomes]
rs72954314	0.82[EUR][1000 genomes]
rs72957983	0.98[EUR][1000 genomes]
rs72957986	0.98[EUR][1000 genomes]
rs72957999	0.98[EUR][1000 genomes]
rs72959615	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72959617	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72967265	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72967284	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72967286	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72967291	0.86[EUR][1000 genomes]
rs7755776	0.98[EUR][1000 genomes]
rs7776273	0.98[EUR][1000 genomes]
rs9359077	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2829863	chr6:74976178-75040446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74996400-74998600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:74996600-74998400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:74998200-74999800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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