Variant report

Variant	rs16884690
Chromosome Location	chr6:75046076-75046077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11752920	0.98[EUR][1000 genomes]
rs11754468	0.84[EUR][1000 genomes]
rs11758445	0.98[EUR][1000 genomes]
rs11759133	0.84[EUR][1000 genomes]
rs16884519	0.96[EUR][1000 genomes]
rs16884624	0.98[EUR][1000 genomes]
rs16884715	0.88[ASN][1000 genomes]
rs16884731	0.85[ASN][1000 genomes]
rs16884733	0.85[ASN][1000 genomes]
rs1817735	0.98[EUR][1000 genomes]
rs3846756	0.83[ASN][1000 genomes]
rs3898077	0.92[EUR][1000 genomes]
rs41367946	0.81[ASN][1000 genomes]
rs4385272	0.83[ASN][1000 genomes]
rs4441922	0.83[ASN][1000 genomes]
rs55784940	0.84[EUR][1000 genomes]
rs55962148	0.92[EUR][1000 genomes]
rs56020332	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56168817	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56206543	0.83[ASN][1000 genomes]
rs56232317	0.92[EUR][1000 genomes]
rs67076726	0.98[EUR][1000 genomes]
rs6926572	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72953763	0.98[EUR][1000 genomes]
rs72954314	0.81[EUR][1000 genomes]
rs72957983	0.96[EUR][1000 genomes]
rs72957986	0.96[EUR][1000 genomes]
rs72957999	0.96[EUR][1000 genomes]
rs72959615	0.98[EUR][1000 genomes]
rs72959617	0.92[EUR][1000 genomes]
rs72959619	0.98[EUR][1000 genomes]
rs72967265	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72967284	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72967286	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72967291	0.84[EUR][1000 genomes]
rs72969239	0.83[ASN][1000 genomes]
rs72969247	0.81[ASN][1000 genomes]
rs7755776	0.96[EUR][1000 genomes]
rs7776273	0.96[EUR][1000 genomes]
rs9359077	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv35015	chr6:75031337-75154143	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75045600-75046600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:75046000-75047000	Enhancers	Fetal Kidney	kidney

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