Variant report

Variant	rs16884746
Chromosome Location	chr6:75066404-75066405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11752582	0.85[AMR][1000 genomes]
rs16884715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16884733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16884854	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3846756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41367946	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4385272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4441922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56020332	1.00[AFR][1000 genomes]
rs56168817	1.00[AFR][1000 genomes]
rs56168999	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56206543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72958951	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72958964	0.82[ASN][1000 genomes]
rs72958991	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72959619	1.00[AFR][1000 genomes]
rs72960912	0.82[EUR][1000 genomes]
rs72960934	0.85[AMR][1000 genomes]
rs72967284	1.00[AFR][1000 genomes]
rs72967286	1.00[AFR][1000 genomes]
rs72967291	1.00[AFR][1000 genomes]
rs72969227	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72969239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72969247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72969251	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv35015	chr6:75031337-75154143	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757178	chr6:75060947-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75061600-75066800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:75061600-75067000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:75065600-75066600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:75065600-75066800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:75065600-75066800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:75065600-75067200	Enhancers	NHEK	skin
7	chr6:75065600-75067800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:75065600-75067800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:75065800-75067000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:75065800-75067600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:75065800-75067600	Enhancers	Osteobl	bone
12	chr6:75065800-75067800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:75066000-75067400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:75066000-75067800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:75066200-75066600	Weak transcription	HMEC	breast
16	chr6:75066200-75067600	Enhancers	NHLF	lung
17	chr6:75066400-75067200	Weak transcription	Ovary	ovary
18	chr6:75066400-75072000	Weak transcription	NHDF-Ad	bronchial

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