Variant report
| Variant | rs16884854 |
|---|---|
| Chromosome Location | chr6:75107223-75107224 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11751066 | 0.82[EUR][1000 genomes] |
| rs11752582 | 0.82[EUR][1000 genomes] |
| rs16884715 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs16884731 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs16884733 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs16884746 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1830595 | 0.82[EUR][1000 genomes] |
| rs3846756 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs41367946 | 0.96[EUR][1000 genomes] |
| rs4385272 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4441922 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs55766784 | 0.87[EUR][1000 genomes] |
| rs56020332 | 1.00[AFR][1000 genomes] |
| rs56168817 | 1.00[AFR][1000 genomes] |
| rs56168999 | 0.96[EUR][1000 genomes] |
| rs56206543 | 1.00[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72958951 | 0.96[EUR][1000 genomes] |
| rs72958964 | 0.85[EUR][1000 genomes] |
| rs72958991 | 0.90[EUR][1000 genomes] |
| rs72959619 | 1.00[AFR][1000 genomes] |
| rs72960912 | 0.90[EUR][1000 genomes] |
| rs72960934 | 0.82[EUR][1000 genomes] |
| rs72967284 | 1.00[AFR][1000 genomes] |
| rs72967286 | 1.00[AFR][1000 genomes] |
| rs72967291 | 1.00[AFR][1000 genomes] |
| rs72969227 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72969239 | 1.00[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72969247 | 1.00[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72969251 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758061 | chr6:74961996-75128165 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2759442 | chr6:74961996-75162222 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv35015 | chr6:75031337-75154143 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2757178 | chr6:75060947-75162222 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv886166 | chr6:75082067-75155303 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv886167 | chr6:75102625-75175449 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75107200-75107600 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
