Variant report

Variant	rs16884948
Chromosome Location	chr8:36224062-36224063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98429076..98431489-chr8:36223053..36226052,2	MCF-7	breast:

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs10103388	1.00[EUR][1000 genomes]
rs10111851	1.00[EUR][1000 genomes]
rs10503987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10503989	1.00[EUR][1000 genomes]
rs10503992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1157478	1.00[EUR][1000 genomes]
rs16875874	1.00[EUR][1000 genomes]
rs16884907	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884954	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884958	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884962	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16884965	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884979	1.00[EUR][1000 genomes]
rs16884990	1.00[EUR][1000 genomes]
rs16884995	1.00[EUR][1000 genomes]
rs16884996	1.00[EUR][1000 genomes]
rs16885001	1.00[EUR][1000 genomes]
rs16885015	1.00[EUR][1000 genomes]
rs16885016	1.00[EUR][1000 genomes]
rs16885018	1.00[EUR][1000 genomes]
rs16885021	1.00[EUR][1000 genomes]
rs16885026	1.00[EUR][1000 genomes]
rs16885028	1.00[EUR][1000 genomes]
rs16885037	1.00[EUR][1000 genomes]
rs16885107	1.00[EUR][1000 genomes]
rs16885108	1.00[EUR][1000 genomes]
rs16885109	1.00[EUR][1000 genomes]
rs16885113	1.00[EUR][1000 genomes]
rs16885115	1.00[EUR][1000 genomes]
rs16885121	1.00[EUR][1000 genomes]
rs16885123	1.00[EUR][1000 genomes]
rs16885125	1.00[EUR][1000 genomes]
rs16885130	1.00[EUR][1000 genomes]
rs16885138	1.00[EUR][1000 genomes]
rs16885140	1.00[EUR][1000 genomes]
rs16885145	1.00[EUR][1000 genomes]
rs16885153	1.00[EUR][1000 genomes]
rs16885190	1.00[EUR][1000 genomes]
rs16885198	1.00[EUR][1000 genomes]
rs16892114	1.00[EUR][1000 genomes]
rs17382352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2000448	1.00[EUR][1000 genomes]
rs2068440	1.00[EUR][1000 genomes]
rs2154461	1.00[EUR][1000 genomes]
rs2406724	1.00[EUR][1000 genomes]
rs2702470	1.00[EUR][1000 genomes]
rs2702491	1.00[EUR][1000 genomes]
rs2702496	1.00[EUR][1000 genomes]
rs2843885	1.00[EUR][1000 genomes]
rs2843886	1.00[EUR][1000 genomes]
rs2843887	1.00[EUR][1000 genomes]
rs3925927	1.00[EUR][1000 genomes]
rs56803225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57055411	1.00[EUR][1000 genomes]
rs57136274	1.00[EUR][1000 genomes]
rs57308719	1.00[EUR][1000 genomes]
rs57758553	1.00[EUR][1000 genomes]
rs57959662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57990211	1.00[EUR][1000 genomes]
rs58431274	1.00[EUR][1000 genomes]
rs58562297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58572029	1.00[EUR][1000 genomes]
rs59143074	1.00[EUR][1000 genomes]
rs59174733	1.00[EUR][1000 genomes]
rs59261730	1.00[EUR][1000 genomes]
rs59452926	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59640681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59802891	1.00[EUR][1000 genomes]
rs60158913	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60587267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60883951	1.00[EUR][1000 genomes]
rs61124681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61338707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6982709	1.00[EUR][1000 genomes]
rs6983386	1.00[EUR][1000 genomes]
rs6984795	1.00[EUR][1000 genomes]
rs6985764	1.00[EUR][1000 genomes]
rs6985948	1.00[EUR][1000 genomes]
rs6991021	1.00[EUR][1000 genomes]
rs7006112	1.00[EUR][1000 genomes]
rs7009892	1.00[EUR][1000 genomes]
rs7010563	1.00[EUR][1000 genomes]
rs7013702	1.00[EUR][1000 genomes]
rs7018078	1.00[EUR][1000 genomes]
rs73578590	1.00[EUR][1000 genomes]
rs73578626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578637	1.00[EUR][1000 genomes]
rs73578638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578644	1.00[EUR][1000 genomes]
rs73578645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578649	1.00[EUR][1000 genomes]
rs73578650	1.00[EUR][1000 genomes]
rs73578653	1.00[EUR][1000 genomes]
rs73580606	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580614	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73580674	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582495	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582496	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582502	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582954	1.00[EUR][1000 genomes]
rs73582970	1.00[EUR][1000 genomes]
rs73582973	1.00[EUR][1000 genomes]
rs73582975	1.00[EUR][1000 genomes]
rs73582980	1.00[EUR][1000 genomes]
rs73582984	1.00[EUR][1000 genomes]
rs73584406	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73585297	1.00[EUR][1000 genomes]
rs73585302	1.00[EUR][1000 genomes]
rs73587404	1.00[EUR][1000 genomes]
rs73587406	1.00[EUR][1000 genomes]
rs73587409	1.00[EUR][1000 genomes]
rs73587410	1.00[EUR][1000 genomes]
rs73587414	1.00[EUR][1000 genomes]
rs73589513	1.00[EUR][1000 genomes]
rs73589516	1.00[EUR][1000 genomes]
rs73589517	1.00[EUR][1000 genomes]
rs73589521	1.00[EUR][1000 genomes]
rs73597492	1.00[EUR][1000 genomes]
rs73597493	1.00[EUR][1000 genomes]
rs73597495	1.00[EUR][1000 genomes]
rs73597496	1.00[EUR][1000 genomes]
rs73597498	1.00[EUR][1000 genomes]
rs73597500	1.00[EUR][1000 genomes]
rs73599424	1.00[EUR][1000 genomes]
rs73599431	1.00[EUR][1000 genomes]
rs73599444	1.00[EUR][1000 genomes]
rs73601408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601438	1.00[EUR][1000 genomes]
rs73601439	1.00[EUR][1000 genomes]
rs73601444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601445	1.00[EUR][1000 genomes]
rs73601448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601454	1.00[EUR][1000 genomes]
rs73601455	1.00[EUR][1000 genomes]
rs73601458	1.00[EUR][1000 genomes]
rs73601462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73601464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890718	chr8:35948467-36224134	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6153	chr8:36190924-36235553	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36222200-36226000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:36222200-36226400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:36222200-36226800	Weak transcription	H1 Cell Line	embryonic stem cell

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