Variant report

Variant	rs16884957
Chromosome Location	chr6:75202692-75202693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1022747	0.93[ASN][1000 genomes]
rs1022748	0.93[ASN][1000 genomes]
rs10498897	0.81[AMR][1000 genomes]
rs12525934	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12528649	0.93[ASN][1000 genomes]
rs12529992	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16885025	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16885073	0.81[AMR][1000 genomes]
rs1971460	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs278331	0.93[ASN][1000 genomes]
rs278333	0.80[ASN][1000 genomes]
rs35883174	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6913433	0.93[ASN][1000 genomes]
rs73453963	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73453972	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73757817	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73757818	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73757819	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73757820	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337652	chr6:75191281-75236324	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75202400-75203200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links