Variant report

Variant	rs16885109
Chromosome Location	chr8:36348407-36348408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10453054	1.00[EUR][1000 genomes]
rs10503987	1.00[EUR][1000 genomes]
rs10503989	1.00[EUR][1000 genomes]
rs10503992	1.00[EUR][1000 genomes]
rs1157478	1.00[EUR][1000 genomes]
rs16875874	1.00[EUR][1000 genomes]
rs16884907	1.00[EUR][1000 genomes]
rs16884936	1.00[EUR][1000 genomes]
rs16884940	1.00[EUR][1000 genomes]
rs16884942	1.00[EUR][1000 genomes]
rs16884948	1.00[EUR][1000 genomes]
rs16884954	1.00[EUR][1000 genomes]
rs16884958	1.00[EUR][1000 genomes]
rs16884962	1.00[EUR][1000 genomes]
rs16884965	1.00[EUR][1000 genomes]
rs16884968	1.00[EUR][1000 genomes]
rs16884969	1.00[EUR][1000 genomes]
rs16884977	1.00[EUR][1000 genomes]
rs16884979	1.00[EUR][1000 genomes]
rs16884990	1.00[EUR][1000 genomes]
rs16884995	1.00[EUR][1000 genomes]
rs16884996	1.00[EUR][1000 genomes]
rs16885001	1.00[EUR][1000 genomes]
rs16885015	1.00[EUR][1000 genomes]
rs16885016	1.00[EUR][1000 genomes]
rs16885018	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16885021	1.00[EUR][1000 genomes]
rs16885026	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16885028	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16885037	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16885107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16885138	1.00[EUR][1000 genomes]
rs16885140	1.00[EUR][1000 genomes]
rs16885145	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16885153	1.00[EUR][1000 genomes]
rs16885190	1.00[EUR][1000 genomes]
rs16885198	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16892114	1.00[EUR][1000 genomes]
rs17382352	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2000448	1.00[EUR][1000 genomes]
rs2068440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2154461	1.00[EUR][1000 genomes]
rs2406724	1.00[EUR][1000 genomes]
rs3925927	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56803225	1.00[EUR][1000 genomes]
rs57055411	1.00[EUR][1000 genomes]
rs57136274	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57308719	1.00[EUR][1000 genomes]
rs57758553	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57959662	1.00[EUR][1000 genomes]
rs57990211	1.00[EUR][1000 genomes]
rs58431274	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58562297	1.00[EUR][1000 genomes]
rs58572029	1.00[EUR][1000 genomes]
rs59143074	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59174733	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59261730	1.00[EUR][1000 genomes]
rs59452926	1.00[EUR][1000 genomes]
rs59640681	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59802891	1.00[EUR][1000 genomes]
rs60158913	1.00[EUR][1000 genomes]
rs60587267	1.00[EUR][1000 genomes]
rs60883951	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61124681	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61338707	1.00[EUR][1000 genomes]
rs6982709	1.00[EUR][1000 genomes]
rs6983386	1.00[EUR][1000 genomes]
rs6984795	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6985764	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6985948	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6991021	1.00[EUR][1000 genomes]
rs7006112	1.00[EUR][1000 genomes]
rs7009892	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010563	1.00[EUR][1000 genomes]
rs7013702	1.00[EUR][1000 genomes]
rs7018078	1.00[EUR][1000 genomes]
rs73578590	1.00[EUR][1000 genomes]
rs73578626	1.00[EUR][1000 genomes]
rs73578627	1.00[EUR][1000 genomes]
rs73578629	1.00[EUR][1000 genomes]
rs73578630	1.00[EUR][1000 genomes]
rs73578637	1.00[EUR][1000 genomes]
rs73578638	1.00[EUR][1000 genomes]
rs73578644	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578645	1.00[EUR][1000 genomes]
rs73578649	1.00[EUR][1000 genomes]
rs73578650	1.00[EUR][1000 genomes]
rs73578653	1.00[EUR][1000 genomes]
rs73580606	1.00[EUR][1000 genomes]
rs73580614	1.00[EUR][1000 genomes]
rs73580674	1.00[EUR][1000 genomes]
rs73582414	1.00[EUR][1000 genomes]
rs73582415	1.00[EUR][1000 genomes]
rs73582417	1.00[EUR][1000 genomes]
rs73582420	1.00[EUR][1000 genomes]
rs73582422	1.00[EUR][1000 genomes]
rs73582427	1.00[EUR][1000 genomes]
rs73582428	1.00[EUR][1000 genomes]
rs73582429	1.00[EUR][1000 genomes]
rs73582431	1.00[EUR][1000 genomes]
rs73582493	1.00[EUR][1000 genomes]
rs73582495	1.00[EUR][1000 genomes]
rs73582496	1.00[EUR][1000 genomes]
rs73582502	1.00[EUR][1000 genomes]
rs73582954	1.00[EUR][1000 genomes]
rs73582970	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73582973	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73582975	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73582980	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73582984	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73584406	1.00[EUR][1000 genomes]
rs73585297	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73585302	1.00[EUR][1000 genomes]
rs73587404	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73587406	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73587409	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73587410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73587414	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73589513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73589516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73589517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73589521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73597492	1.00[EUR][1000 genomes]
rs73597493	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73597495	1.00[EUR][1000 genomes]
rs73597496	1.00[EUR][1000 genomes]
rs73597498	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73597500	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73599424	1.00[EUR][1000 genomes]
rs73599431	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73599444	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73601408	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73601409	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73601438	1.00[EUR][1000 genomes]
rs73601439	1.00[EUR][1000 genomes]
rs73601444	1.00[EUR][1000 genomes]
rs73601445	1.00[EUR][1000 genomes]
rs73601448	1.00[EUR][1000 genomes]
rs73601450	1.00[EUR][1000 genomes]
rs73601454	1.00[EUR][1000 genomes]
rs73601455	1.00[EUR][1000 genomes]
rs73601458	1.00[EUR][1000 genomes]
rs73601462	1.00[EUR][1000 genomes]
rs73601464	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034989	chr8:36242017-36436244	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1017086	chr8:36252557-36372332	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1026897	chr8:36252557-36435042	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1023238	chr8:36252557-36530138	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1021042	chr8:36255132-36436244	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2761423	chr8:36255144-36403035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1015637	chr8:36307431-36439165	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1808283	chr8:36331511-36371644	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1814472	chr8:36331511-36371644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv520391	chr8:36331511-36384831	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36348200-36348800	Enhancers	Fetal Brain Male	brain
2	chr8:36348200-36349200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr8:36348200-36350000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:36348200-36353200	Enhancers	Brain Germinal Matrix	brain
5	chr8:36348400-36348600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:36348400-36349200	Enhancers	Brain Angular Gyrus	brain

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