Variant report

Variant	rs16885155
Chromosome Location	chr8:36377850-36377851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10453054	0.87[AFR][1000 genomes]
rs10503989	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10503992	0.89[AFR][1000 genomes]
rs16884995	1.00[AMR][1000 genomes]
rs16884996	1.00[AMR][1000 genomes]
rs16885001	1.00[AMR][1000 genomes]
rs16885015	1.00[AMR][1000 genomes]
rs16885016	1.00[AMR][1000 genomes]
rs16885018	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16885026	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16885028	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16885037	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16885145	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16885190	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16885198	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17382352	0.87[AFR][1000 genomes]
rs2406724	1.00[AMR][1000 genomes]
rs3925927	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56803225	0.95[AFR][1000 genomes]
rs58431274	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59143074	0.82[AFR][1000 genomes]
rs59640681	0.85[AFR][1000 genomes]
rs59802891	1.00[AMR][1000 genomes]
rs61124681	0.86[AFR][1000 genomes]
rs6984795	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6985764	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578590	1.00[AMR][1000 genomes]
rs73578626	0.80[AFR][1000 genomes]
rs73578630	0.80[AFR][1000 genomes]
rs73578649	1.00[AMR][1000 genomes]
rs73578653	1.00[AMR][1000 genomes]
rs73582954	1.00[AMR][1000 genomes]
rs73582970	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582973	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582975	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582980	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582984	1.00[AMR][1000 genomes]
rs73585297	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73597493	0.82[AFR][1000 genomes]
rs73597498	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73597500	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73599431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73599444	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601408	0.97[AFR][1000 genomes]
rs73601409	0.97[AFR][1000 genomes]
rs73601444	0.93[AFR][1000 genomes]
rs73601448	0.90[AFR][1000 genomes]
rs73601450	0.85[AFR][1000 genomes]
rs73601462	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034989	chr8:36242017-36436244	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1026897	chr8:36252557-36435042	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1023238	chr8:36252557-36530138	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1021042	chr8:36255132-36436244	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2761423	chr8:36255144-36403035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1015637	chr8:36307431-36439165	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv520391	chr8:36331511-36384831	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv982088	chr8:36374918-36385547	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36376200-36380800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:36377000-36378000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:36377800-36378000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr8:36377800-36378000	Enhancers	Fetal Muscle Leg	muscle

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