Variant report

Variant	rs16887337
Chromosome Location	chr6:55747157-55747158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16887441	1.00[AMR][1000 genomes]
rs2397192	1.00[AMR][1000 genomes]
rs2397193	1.00[AMR][1000 genomes]
rs9475486	1.00[AMR][1000 genomes]
rs9475499	1.00[AMR][1000 genomes]
rs9475539	1.00[AMR][1000 genomes]
rs9475543	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1032684	chr6:55680473-55766876	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55741200-55747400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:55742800-55747600	Weak transcription	Fetal Lung	lung
3	chr6:55745600-55750600	Enhancers	Fetal Heart	heart
4	chr6:55745800-55748600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:55745800-55749200	Enhancers	Hela-S3	cervix
6	chr6:55746600-55747200	Enhancers	A549	lung
7	chr6:55746600-55748400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:55746800-55749800	Enhancers	HUVEC	blood vessel
9	chr6:55747000-55748200	Enhancers	NHEK	skin
10	chr6:55747000-55748400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:55747000-55748400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:55747000-55748400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:55747000-55748600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:55747000-55748600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:55747000-55748600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:55747000-55748600	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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