Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12203179	0.95[ASN][1000 genomes]
rs16887606	0.81[AFR][1000 genomes]
rs16887615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17221026	0.97[EUR][1000 genomes]
rs17223058	0.91[EUR][1000 genomes]
rs17819585	0.98[EUR][1000 genomes]
rs17819753	0.98[EUR][1000 genomes]
rs17819824	0.98[EUR][1000 genomes]
rs1925178	0.98[EUR][1000 genomes]
rs2076475	0.98[EUR][1000 genomes]
rs2143359	0.98[EUR][1000 genomes]
rs2840992	0.97[EUR][1000 genomes]
rs35471617	0.98[EUR][1000 genomes]
rs57122743	0.98[EUR][1000 genomes]
rs59186267	0.98[EUR][1000 genomes]
rs60913237	0.98[EUR][1000 genomes]
rs742496	0.81[AFR][1000 genomes]
rs742497	0.81[AFR][1000 genomes]
rs742498	0.81[AFR][1000 genomes]
rs763966	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55984000-56037000	Weak transcription	Fetal Kidney	kidney
2	chr6:55999000-56021200	Weak transcription	Aorta	Aorta
3	chr6:56013000-56036400	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:56017800-56021000	Weak transcription	Fetal Stomach	stomach
5	chr6:56019400-56023400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:56019600-56020400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:56019600-56021000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:56019600-56021800	Strong transcription	Fetal Muscle Leg	muscle
9	chr6:56019800-56020600	Weak transcription	Ovary	ovary
10	chr6:56019800-56021800	Strong transcription	Fetal Muscle Trunk	muscle
11	chr6:56020000-56021800	Strong transcription	Fetal Lung	lung
12	chr6:56020000-56023400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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