Variant report

Variant	rs16887699
Chromosome Location	chr6:56090575-56090576
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16887606	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16887630	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16887668	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16887702	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887707	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887709	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887711	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2038174	0.87[AMR][1000 genomes]
rs6933466	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs735113	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs742496	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs742497	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs742498	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7451552	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464337	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung
2	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:56085000-56093600	Enhancers	NHDF-Ad	bronchial
4	chr6:56086200-56092600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:56086600-56093200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:56087400-56092400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:56087600-56091000	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:56087800-56093200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:56088800-56090800	Enhancers	HSMM	muscle
10	chr6:56089000-56091600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:56089200-56091000	Enhancers	A549	lung
12	chr6:56089200-56092200	Weak transcription	Fetal Kidney	kidney
13	chr6:56089200-56092600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:56089200-56095800	Weak transcription	HMEC	breast
15	chr6:56089200-56097600	Weak transcription	Aorta	Aorta
16	chr6:56089400-56095600	Weak transcription	NHEK	skin
17	chr6:56089400-56096000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:56089600-56091200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:56090200-56091400	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:56090400-56091400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:56090400-56091400	Weak transcription	Osteobl	bone
22	chr6:56090400-56091600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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