Variant report

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16887606	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16887630	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16887668	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16887699	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887707	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887709	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887711	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2038174	0.87[AMR][1000 genomes]
rs6933466	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs735113	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs742496	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs742497	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs742498	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7451552	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464337	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56082200-56104800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:56089200-56097600	Weak transcription	Aorta	Aorta
3	chr6:56092000-56097400	Weak transcription	Ovary	ovary
4	chr6:56092600-56099800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:56092600-56100000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:56093000-56100000	Weak transcription	Osteobl	bone
7	chr6:56093200-56097000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:56095000-56097800	Enhancers	Colon Smooth Muscle	Colon
9	chr6:56095400-56096400	Enhancers	HUVEC	blood vessel
10	chr6:56095600-56096400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:56095600-56096400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:56095600-56096400	Enhancers	A549	lung
13	chr6:56095600-56096400	Enhancers	NHEK	skin
14	chr6:56095600-56097200	Enhancers	Fetal Lung	lung
15	chr6:56095800-56096400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:56095800-56096400	Enhancers	Fetal Stomach	stomach
17	chr6:56095800-56096400	Enhancers	Small Intestine	intestine
18	chr6:56095800-56096400	Enhancers	HMEC	breast
19	chr6:56096000-56096400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:56096000-56096400	Weak transcription	Rectal Smooth Muscle	rectum

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