Variant report

Variant	rs16891065
Chromosome Location	chr5:62073197-62073198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr5:62072860-62073225	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:62073161-62073211	SKMC	muscle:	n/a
2	chr5:62073161-62073211	AG04450	lung:	fetal
3	chr5:62073161-62073211	K562	blood:	n/a
4	chr5:62073161-62073211	U87	brain:	n/a
5	chr5:62073161-62073211	BE2_C	brain:	n/a
6	chr5:62073161-62073211	SK-N-MC	brain:	n/a
7	chr5:62073161-62073211	HCT-116	colon:	n/a
8	chr5:62073161-62073211	Jurkat	blood:	n/a
9	chr5:62073161-62073211	NH-A	brain:	n/a
10	chr5:62073161-62073211	HCF	heart:	n/a
11	chr5:62073161-62073211	H1-hESC	embryonic stem cell:	embryo
12	chr5:62073161-62073211	PrEC	prostate:	n/a
13	chr5:62073161-62073211	Hepatocyte	liver:	n/a
14	chr5:62073161-62073211	HAEpiC	amniotic membrane:	n/a
15	chr5:62073161-62073211	SAEC	small airway:	n/a
16	chr5:62073161-62073211	HMEC	breast:	n/a
17	chr5:62073161-62073211	LNCaP	prostate:	n/a
18	chr5:62073161-62073211	SK-N-SH_RA	brain:	n/a
19	chr5:62073161-62073211	GM12891	blood:	n/a
20	chr5:62073161-62073211	HCPEpiC	choroid plexus:	n/a
21	chr5:62073161-62073211	NT2-D1	testis:	n/a
22	chr5:62073161-62073211	RPTEC	kidney:	n/a
23	chr5:62073161-62073211	HUVEC	blood vessel:	n/a
24	chr5:62073161-62073211	GM12892	blood:	n/a
25	chr5:62073161-62073211	IMR90	lung:	fetal
26	chr5:62073161-62073211	AG04449	skin:	fetal
27	chr5:62073161-62073211	ovcar-3	ovarian:	n/a
28	chr5:62073161-62073211	HNPCEpiC	eye:	n/a
29	chr5:62073161-62073211	HRCEpiC	kidney:	n/a
30	chr5:62073161-62073211	HepG2	liver:	n/a
31	chr5:62073161-62073211	SK-N-SH	brain:	n/a
32	chr5:62073161-62073211	A549	lung:	n/a
33	chr5:62073161-62073211	HPAEpiC	pulmonary alveolar:	n/a
34	chr5:62073161-62073211	HRE	kidney:	n/a
35	chr5:62073161-62073211	HL-60	blood:	n/a
36	chr5:62073161-62073211	MCF-7	breast:	n/a
37	chr5:62073161-62073211	HCM	heart:	n/a
38	chr5:62073161-62073211	PFSK-1	brain:	n/a
39	chr5:62073161-62073211	PANC-1	pancreas:	n/a
40	chr5:62073161-62073211	GM19239	blood:	n/a
41	chr5:62073161-62073211	NHDF-neo	bronchial:	n/a
42	chr5:62073161-62073211	Hela-S3	cervix:	n/a
43	chr5:62073161-62073211	AG09309	skin:	n/a
44	chr5:62073161-62073211	ProgFib	skin:	n/a
45	chr5:62073161-62073211	MCF10A-Er-Src	breast:	n/a
46	chr5:62073161-62073211	ECC-1	luminal epithelium:	n/a
47	chr5:62073161-62073211	Caco-2	colon:	n/a
48	chr5:62073161-62073211	AoSMC	blood vessel:	n/a
49	chr5:62073161-62073211	HEK293	kidney:	embryo
50	chr5:62073161-62073211	CMK	blood:	n/a

No data

Variant related genes	Relation type
ISCA1P1	TF binding region
ISCA1P1	CpG island

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57471059	1.00[AMR][1000 genomes]
rs73119974	1.00[AMR][1000 genomes]
rs73119976	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763458	chr5:61852234-62157166	ZNF genes & repeats Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022817	chr5:61853619-62149259	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv948334	chr5:61891622-62197219	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1022825	chr5:62025524-62874332	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1033401	chr5:62025524-62875830	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1035049	chr5:62027995-62875830	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2757118	chr5:62031365-62102343	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv2759346	chr5:62031365-62102343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv10706	chr5:62039724-62105414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv881738	chr5:62039960-62110910	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv881739	chr5:62042182-62110910	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv34525	chr5:62047644-62102344	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv881740	chr5:62048009-62110910	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv964863	chr5:62071029-62073562	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv2752896	chr5:62073197-62846973	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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