Variant report

Variant	rs16891800
Chromosome Location	chr6:81171993-81171994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10452562	1.00[EUR][1000 genomes]
rs1836960	1.00[EUR][1000 genomes]
rs4498303	1.00[EUR][1000 genomes]
rs4562096	1.00[EUR][1000 genomes]
rs4583942	1.00[EUR][1000 genomes]
rs56384135	1.00[EUR][1000 genomes]
rs56792199	1.00[EUR][1000 genomes]
rs57987456	1.00[EUR][1000 genomes]
rs61163277	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6454160	1.00[EUR][1000 genomes]
rs6454173	1.00[EUR][1000 genomes]
rs6902405	1.00[EUR][1000 genomes]
rs6928467	1.00[EUR][1000 genomes]
rs6933538	1.00[EUR][1000 genomes]
rs6938082	1.00[EUR][1000 genomes]
rs73471450	1.00[EUR][1000 genomes]
rs73471494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73471501	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73473428	1.00[EUR][1000 genomes]
rs73473435	1.00[EUR][1000 genomes]
rs73475610	1.00[EUR][1000 genomes]
rs73748607	1.00[EUR][1000 genomes]
rs73748610	1.00[EUR][1000 genomes]
rs73748616	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7747214	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7747880	1.00[EUR][1000 genomes]
rs7756784	1.00[EUR][1000 genomes]
rs7764790	0.81[YRI][hapmap]
rs7768308	1.00[EUR][1000 genomes]
rs7768835	1.00[EUR][1000 genomes]
rs7772770	1.00[EUR][1000 genomes]
rs7773470	1.00[EUR][1000 genomes]
rs9448968	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81163000-81179800	Weak transcription	Right Ventricle	heart
2	chr6:81167600-81175000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:81167600-81181400	Weak transcription	Ovary	ovary
4	chr6:81167600-81184800	Weak transcription	Pancreas	Pancrea
5	chr6:81167800-81176200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:81168200-81172800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:81168200-81187000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:81168400-81175200	Weak transcription	Fetal Lung	lung
9	chr6:81170800-81173000	Weak transcription	HSMMtube	muscle
10	chr6:81170800-81173800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:81170800-81187200	Weak transcription	HSMM	muscle
12	chr6:81171000-81172800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:81171200-81172000	Enhancers	HUES48 Cell Line	embryonic stem cell

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